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Search results 201 to 300 out of 2746 for Pattern triggered immunity

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Hits by Organism

Type Details Score
GO Term
GO:0090659 | walking behavior
Description: The behavior of an organism relating to the progression of that organism along the ground by the process of lifting and setting down each leg.
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GO Term
GO:0009956 | radial pattern formation
Description: The regionalization process that results in defined areas around a point in which specific types of cell differentiation will occur.
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GO Term
GO:0009955 | adaxial/abaxial pattern specification
Description: The regionalization process in which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure.
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GO Term
GO:0097353 | centrolateral pattern formation
Description: The regionalization process in which the areas along the centrolateral axis are established that will lead to differences in cell differentiation, or in which cells interpret a specific environment.
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Ontology Term Synonym
Ontology Term Synonym
Name: locomotor gait pattern
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: kidney pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: kidney pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: metanephros pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: metanephros pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: embryonic pattern biosynthesis
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: embryonic pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: anterior/posterior pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: radial pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: adaxial/abaxial pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: proximal/distal pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: dorsal-ventral pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: dorsal/ventral pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: dorsoventral pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: apical-basal pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: mesonephros pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: mesonephros pattern specification
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: mediolateral pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: trichome pattern formation
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: trichome pattern biosynthesis
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: trichome pattern specification
Type: synonym
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Gene
AT3G23050 | locus:2094598 | IAA7 | indole-3-acetic acid 7
Length: 2556  
Chromosome Location: Chr3: 8194606-8197161
Organism . Short Name: A. thaliana
TAIR Computational Description: indole-3-acetic acid 7;(source:Araport11)
TAIR Curator Summary: Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. Pseudomonas syringae type III effector AvrRpt2 stimulates AXR2 protein turnover.
TAIR Short Description: indole-3-acetic acid 7
TAIR Aliases: AXR2, IAA7
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Gene
AT5G11060 | locus:2184911 | KNAT4 | KNOTTED1-like homeobox gene 4
Length: 3909  
Chromosome Location: Chr5: 3509833-3513741
Organism . Short Name: A. thaliana
TAIR Computational Description: homeobox protein knotted-1-like 4;(source:Araport11)
TAIR Curator Summary: A member of Class II KN1-like homeodomain transcription factors (together with KNAT3 and KNAT5), with greatest homology to the maize knox1 homeobox protein. Expression regulated by light. Detected in all tissues examined, but most prominent in leaves and young siliques. Transient expression of GFP translational fusion protein suggests bipartite localization in nucleus and cytoplasm. KNAT4 promoter activity showed cell-type specific pattern along longitudinal root axis; GUS expression pattern started at the elongation zone, predominantly in the phloem and pericycle cells, extending to endodermis toward the base of the root.
TAIR Short Description: KNOTTED1-like homeobox gene 4
TAIR Aliases: KNAT4
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Gene
AT5G55540 | locus:2173952 | TRN1 | TORNADO 1
Length: 4519  
Chromosome Location: Chr5: 22496196-22500714
Organism . Short Name: A. thaliana
TAIR Computational Description: tornado 1;(source:Araport11)
TAIR Curator Summary: Encodes a large plant-specific protein of unknown function, with conserved domains also found in a variety of signaling proteins, In trn mutants, the leaf venation network had a severely reduced complexity: incomplete loops, no tertiary or quaternary veins, and vascular islands. The leaf laminas were asymmetric and narrow because of a severely reduced cell number. TRN1 is required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway.
TAIR Short Description: tornado 1
TAIR Aliases: LOP1, TRN1
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Gene
AT2G27230 | locus:2039580 | LHW | LONESOME HIGHWAY
Length: 3786  
Chromosome Location: Chr2: 11650358-11654143
Organism . Short Name: A. thaliana
TAIR Computational Description: transcription factor-like protein;(source:Araport11)
TAIR Curator Summary: Encodes a nuclear-localized transcriptional activator with weak sequence similarity to basic helix-loop-helix(bHLH)-domain proteins. It promotes the production of stele cells in root meristems and is required to establish and maintain the normal vascular cell number and pattern in primary and lateral roots.
TAIR Short Description: transcription factor-related
TAIR Aliases: LHW
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Gene
AT2G28620 | locus:2065505 | AT2G28620 | -
Length: 5836  
Chromosome Location: Chr2: 12264928-12270763
Organism . Short Name: A. thaliana
TAIR Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11)
TAIR Curator Summary: Mutants have radially swollen roots but do not exhibit defects in abundance or orientation of cortical microtubules, nor are microfibrils reduced. Cellulose synthesis is also unchanged with respect to wild type. There is a disruption in the normal pattern of cell wall placement.
TAIR Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
TAIR Aliases: RSW7
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Gene
AT3G53350 | locus:2083951 | RIP3 | ROP interactive partner 3
Length: 2773  
Chromosome Location: Chr3: 19779978-19782750
Organism . Short Name: A. thaliana
TAIR Computational Description: ROP interactive partner 4;(source:Araport11)
TAIR Curator Summary: Encodes RIP3 (ROP interactive partner 3), a microtubule-binding protein that is anchored to the plasma membrane domains and promotes local microtubule disassembly, forming as specific pattern of secondary walls in xylem vessel cells. Localized at microtubules and interacts with the plant-specific kinesin AtKinesin-13A.
TAIR Short Description: ROP interactive partner 4
TAIR Aliases: MIDD1, RIP3, RIP4
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Gene
AT5G63420 | locus:2167336 | emb2746 | embryo defective 2746
Length: 5934  
Chromosome Location: Chr5: 25400317-25406250
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA-metabolising metallo-beta-lactamase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the metallo-beta-lactamase protein family that plays a vital role in embryo morphogenesis and apical-basal pattern formation by regulating chloroplast development. In bacteria, RNase J plays an important role in rRNA maturation and in the 5′ stability of mRNA.
TAIR Short Description: RNA-metabolising metallo-beta-lactamase family protein
TAIR Aliases: AtRNJ, emb2746, RNJ
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Gene
AT5G65050 | locus:2177749 | AGL31 | AGAMOUS-like 31
Length: 4182  
Chromosome Location: Chr5: 25982254-25986435
Organism . Short Name: A. thaliana
TAIR Computational Description: AGAMOUS-like 31;(source:Araport11)
TAIR Curator Summary: Originally published as Agamous like MADS-box protein AGL31. One of a group of MADS box genes involved in control of flowering time. Four variant sequences have been identified for this locus but have not been characterized for differences in expression pattern and/or function.
TAIR Short Description: AGAMOUS-like 31
TAIR Aliases: AGL31, MAF2
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Ontology Term Synonym
Ontology Term Synonym
Name: ETI triggered of host innate immune response
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: activation of apoptosis triggered by ER stress
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: up-regulation of apoptosis triggered by ER stress
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: upregulation of apoptosis triggered by ER stress
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: regulation of apoptosis triggered by ER stress
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: down-regulation of apoptosis triggered by ER stress
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: downregulation of apoptosis triggered by ER stress
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: inhibition of apoptosis triggered by ER stress
Type: synonym
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Gene
AT1G21880 | locus:2201143 | LYM1 | lysm domain GPI-anchored protein 1 precursor
Length: 2252  
Chromosome Location: Chr1: 7680390-7682641
Organism . Short Name: A. thaliana
TAIR Computational Description: lysm domain GPI-anchored protein 1 precursor;(source:Araport11)
TAIR Curator Summary: Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant. It contains a C-terminal GPI anchor signal and is an ortholog of OsLYP4 and OsLYP6. Phosphatidylinositol 4-phosphate 5-kinase (PIP5K) enzyme family member.
TAIR Short Description: lysm domain GPI-anchored protein 1 precursor
TAIR Aliases: LYM1, LYP2
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Gene
AT5G60120 | locus:2164170 | TOE2 | target of early activation tagged (EAT) 2
Length: 4055  
Chromosome Location: Chr5: 24207689-24211743
Organism . Short Name: A. thaliana
TAIR Computational Description: target of early activation tagged (EAT) 2;(source:Araport11)
TAIR Curator Summary: AP2 family transcription factor that is involved in regulation of flowering and innate immunity.Interacts with CRY1 and CRY2 during flowering as part of a regulatory circuit including FT and CO. TOE1/TOE2 are also targets of MiR172b repression and functions in regulation of innate immunity via repression of FLS.
TAIR Short Description: target of early activation tagged (EAT) 2
TAIR Aliases: TOE2
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Gene
AT5G00585 | - | AT5G00585 | -
Length: 1660  
Chromosome Location: Chr5: 17958305-17959964
Organism . Short Name: A. thaliana
TAIR Computational Description: novel transcribed region;(source:Araport11)
TAIR Curator Summary: AT5G00585 (PROSCOOP3) is currently annotated as long noncoding RNA. The gene is composed of two exons (supported by several transcript assemblies) and including a small ORF. The CDS coordinates are : join(17958404..17958518,17959316..17959362) (Sébastien Aubourg, pers. communication). SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects.
TAIR Short Description: NULL
TAIR Aliases: PROSCOOP3
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Gene
AT1G27130 | locus:2205784 | GSTU13 | glutathione S-transferase tau 13
Length: 1618  
Chromosome Location: Chr1: 9425280-9426897
Organism . Short Name: A. thaliana
TAIR Computational Description: glutathione S-transferase tau 13;(source:Araport11)
TAIR Curator Summary: Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). GSTU13 acts in the pathogen triggered pathway for indole glucosinolate metabolisms that involves also PENETRATION2 myrosinase. It is likely the enzyme that conjugates GSH with unstable indol-3-ylmethyl-ITCs formed upon PEN2-mediated IG hydrolysis, particularly in the branch of this pathway in which 4-substituted IGs are processed.
TAIR Short Description: glutathione S-transferase tau 13
TAIR Aliases: ATGSTU13, GST12, GSTU13
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GO Term
GO:0002708 | positive regulation of lymphocyte mediated immunity
Description: Any process that activates or increases the frequency, rate, or extent of lymphocyte mediated immunity.
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Gene
AT1G61380 | locus:2197729 | SD1-29 | S-domain-1 29
Length: 4150  
Chromosome Location: Chr1: 22645923-22650072
Organism . Short Name: A. thaliana
TAIR Computational Description: S-domain-1 29;(source:Araport11)
TAIR Curator Summary: Encodes a membrane localized S-domain receptor kinase that is involved in lipopolysaccharide (LPS) sensing. SD1-29 detected LPS of Pseudomonas and Xanthomonas species for which it serves as a microbe associated molecular pattern triggering innate immunity. Loses of function mutants are hyper susceptible to P.syringae.
TAIR Short Description: S-domain-1 29
TAIR Aliases: LORE, SD1-29
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Gene
AT1G77850 | locus:2029436 | ARF17 | auxin response factor 17
Length: 3434  
Chromosome Location: Chr1: 29272074-29275507
Organism . Short Name: A. thaliana
TAIR Computational Description: auxin response factor 17;(source:Araport11)
TAIR Curator Summary: Encodes a transcriptional regulator that directly binds to the promoter of MYB108 and plays a crucial role in anther dehiscence, pollen wall pattern formation, tapetum development, and auxin signal transduction in anthers. It is post-transcriptionally regulated by miR160 and regulates early auxin response genes.
TAIR Short Description: auxin response factor 17
TAIR Aliases: ARF17
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Publication
10426995
First Author: Brightbill HD
Title: Host defense mechanisms triggered by microbial lipoproteins through toll-like receptors.
Year: 1999
Journal: Science
Volume: 285
Pages: 732-6
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Gene
AT1G04250 | locus:2018374 | AXR3 | AUXIN RESISTANT 3
Length: 2586  
Chromosome Location: Chr1: 1136078-1138663
Organism . Short Name: A. thaliana
TAIR Computational Description: AUX/IAA transcriptional regulator family protein;(source:Araport11)
TAIR Curator Summary: Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling and is a positive modulator of natural leaf senescence. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components.
TAIR Short Description: AUX/IAA transcriptional regulator family protein
TAIR Aliases: AtIAA17, AXR3, IAA17
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Gene
AT2G33590 | locus:2051008 | CRL1 | CCR(Cinnamoyl coA:NADP oxidoreductase)-like 1
Length: 2369  
Chromosome Location: Chr2: 14224268-14226636
Organism . Short Name: A. thaliana
TAIR Computational Description: NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a protein with homology to members of the dihydroflavonol-4-reductase (DFR) superfamily. The expression pattern of AtCRL1 indicates that CRL1 has a role in embryogenesis and seed germination. AtCRL1 is induced by ABA, drought and heat, and is highly expressed in seeds. The mRNA is cell-to-cell mobile.
TAIR Short Description: NAD(P)-binding Rossmann-fold superfamily protein
TAIR Aliases: AtCRL1, CRL1
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Gene
AT3G09600 | locus:2075049 | RVE8 | REVEILLE 8
Length: 2779  
Chromosome Location: Chr3: 2946239-2949017
Organism . Short Name: A. thaliana
TAIR Computational Description: Homeodomain-like superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a MYB-like transcription factor similar to CIRCADIAN CLOCK-ASSOCIATED1 (CCA1) and ELONGATED HYPOCOTYL (LHY). Involved in the regulation of circadian clock by modulating the pattern of histone 3 (H3) acetylation. Functions as a transcriptional activator of evening element containing clock genes. Involved in heat shock response.
TAIR Short Description: Homeodomain-like superfamily protein
TAIR Aliases: LCL5, RVE8
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Gene
AT3G46510 | locus:2075140 | PUB13 | plant U-box 13
Length: 3167  
Chromosome Location: Chr3: 17123731-17126897
Organism . Short Name: A. thaliana
TAIR Computational Description: plant U-box 13;(source:Araport11)
TAIR Curator Summary: Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. Can be phosphorylated in vitro by MLPK, ARK1, and ARK2 but not by SD1-29. Involved in ubiquitination of pattern recognition receptor FLS2.
TAIR Short Description: plant U-box 13
TAIR Aliases: ATPUB13, PUB13
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Gene
AT1G16510 | locus:2032915 | AT1G16510 | -
Length: 872  
Chromosome Location: Chr1: 5644572-5645443
Organism . Short Name: A. thaliana
TAIR Computational Description: SAUR-like auxin-responsive protein family;(source:Araport11)
TAIR Curator Summary: Encodes a clade III SAUR gene with a distinctive expression pattern in root meristems. It is normally expressed in the quiescent center and cortex/endodermis initials and upon auxin stimulation, the expression is found in the endodermal layer. Overexpression studies suggest roles in cell expansion and auxin transport.
TAIR Short Description: SAUR-like auxin-responsive protein family
TAIR Aliases: SAUR41
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Gene
AT5G35520 | locus:2169508 | MIS12 | MINICHROMOSOME INSTABILITY 12 (MIS12)-LIKE
Length: 1952  
Chromosome Location: Chr5: 13701290-13703241
Organism . Short Name: A. thaliana
TAIR Computational Description: minichromosome instability 12 (mis12)-like protein;(source:Araport11)
TAIR Curator Summary: encodes a homologue of the yeast (S. pombe) Mis12 (minichromosome instability) protein. MIS12 co-localizes with 180 bp repeats of centromeric DNA throughout the cell cycle with a similar pattern to AtCENH3/HTR12. Neither of these two proteins completely cover the 180 bp regions based on FISH analysis.
TAIR Short Description: minichromosome instability 12 (mis12)-like
TAIR Aliases: ATMIS12, MIS12
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GO Term
GO:0002707 | negative regulation of lymphocyte mediated immunity
Description: Any process that stops, prevents, or reduces the frequency, rate, or extent of lymphocyte mediated immunity.
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GO Term
GO:0072098 | anterior/posterior pattern specification involved in kidney development
Description: The developmental process that results in the creation of defined areas or spaces within the kidney along the anterior/posterior axis to which cells respond and eventually are instructed to differentiate.
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Gene
AT5G03350 | locus:2142679 | AT5G03350 | -
Length: 1061  
Chromosome Location: Chr5: 815610-816670
Organism . Short Name: A. thaliana
TAIR Computational Description: Legume lectin family protein;(source:Araport11)
TAIR Curator Summary: Belongs to the group of early SA-activated genes. Involved in resistance to Pst Avr-Rpm1 as a component of the SA35 mediated defense processes associated to the ETI response. Involved in resistance to P.syringae pv. tomato Avr-Rpm1 in Arabidopsis, as a component of the SA-mediated defense processes associated with the effector-triggered immunity response.
TAIR Short Description: Legume lectin family protein
TAIR Aliases: SAI-LLP1
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GO Term
GO:0002705 | positive regulation of leukocyte mediated immunity
Description: Any process that activates or increases the frequency, rate, or extent of leukocyte mediated immunity.
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Protein Domain
IPR000290
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Protein Domain
IPR035900
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Protein Domain
IPR028953
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Gene
AT2G46710 | locus:2062770 | ROPGAP3 | ROP guanosine triphosphatase (GTPase)-activating protein 3
Length: 3847  
Chromosome Location: Chr2: 19191247-19195093
Organism . Short Name: A. thaliana
TAIR Computational Description: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain-containing protein;(source:Araport11)
TAIR Curator Summary: ROP (Rho of plant GTPases) family member Involved in cell wall patterning. Encodes ROP inactivator, regulates the formation of ROP-activated domains; these in turn determined the pattern of cell wall pits. Positively regulates pit formation, but negatively regulates pit size, required for periodic formation of secondary cell wall pits.
TAIR Short Description: Rho GTPase activating protein with PAK-box/P21-Rho-binding domain
TAIR Aliases: ROPGAP3
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Gene
AT3G11490 | locus:2080762 | AT3G11490 | -
Length: 2801  
Chromosome Location: Chr3: 3617264-3620064
Organism . Short Name: A. thaliana
TAIR Computational Description: rac GTPase activating protein;(source:Araport11)
TAIR Curator Summary: ROP (Rho of plant GTPases) family member Involved in cell wall patterning. Encodes ROP inactivator, regulates the formation of ROP-activated domains; these in turn determined the pattern of cell wall pits. Positively regulates pit formation, but negatively regulates pit size, required for periodic formation of secondary cell wall pits.
TAIR Short Description: rac GTPase activating protein
TAIR Aliases: ROPGAP4
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Gene
AT4G00450 | locus:2126056 | CCT | CENTER CITY
Length: 10436  
Chromosome Location: Chr4: 200874-211309
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA polymerase II transcription mediator;(source:Araport11)
TAIR Curator Summary: Encodes the Arabidopsis homolog of the transcriptional regulator MED12, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. Involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype.
TAIR Short Description: RNA polymerase II transcription mediators
TAIR Aliases: CCT, CRP, MED12
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GO Term
GO:0000762 | pheromone-induced unidirectional conjugation
Description: Unidirectional transfer of genetic information triggered by to a pheromone signal.
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GO Term
GO:0002704 | negative regulation of leukocyte mediated immunity
Description: Any process that stops, prevents, or reduces the frequency, rate, or extent of leukocyte mediated immunity.
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Gene
AT4G20270 | locus:2120412 | BAM3 | BARELY ANY MERISTEM 3
Length: 3541  
Chromosome Location: Chr4: 10949573-10953113
Organism . Short Name: A. thaliana
TAIR Computational Description: Leucine-rich receptor-like protein kinase family protein;(source:Araport11)
TAIR Curator Summary: Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. The mRNA is cell-to-cell mobile.
TAIR Short Description: Leucine-rich receptor-like protein kinase family protein
TAIR Aliases: BAM3
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GO Term
GO:0002712 | regulation of B cell mediated immunity
Description: Any process that modulates the frequency, rate, or extent of B cell mediated immunity.
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GO Term
GO:0002709 | regulation of T cell mediated immunity
Description: Any process that modulates the frequency, rate, or extent of T cell mediated immunity.
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Gene
AT5G42810 | locus:2165437 | IPK1 | inositol-pentakisphosphate 2-kinase 1
Length: 2758  
Chromosome Location: Chr5: 17166702-17169459
Organism . Short Name: A. thaliana
TAIR Computational Description: inositol-pentakisphosphate 2-kinase 1;(source:Araport11)
TAIR Curator Summary: Encodes an inositol tetra-/pentaphosphate 2-kinase, involved in the biosynthesis of phytic acid, a regulator of intracellular signaling, a highly abundant animal antinutrient, and a phosphate and mineral storage compound in plant seeds. Is also required for growth and modulates phosphate homeostasis at the transcriptional level. Together with ITPK1 modulate crosstalks between SA-dependent immunity and phosphate-starvation responses.
TAIR Short Description: inositol-pentakisphosphate 2-kinase 1
TAIR Aliases: AtIP5, ATIPK1, IPK1
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mRNA
AT1G05470.1
Length: 2988  
Chromosome Location: Chr1: 1607202-1611840
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mRNA
AT1G05470.2
Length: 3518  
Chromosome Location: Chr1: 1607227-1611815
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Gene
AT3G27060 | locus:2092030 | TSO2 | TSO MEANING 'UGLY' IN CHINESE 2
Length: 1780  
Chromosome Location: Chr3: 9979841-9981620
Organism . Short Name: A. thaliana
TAIR Computational Description: Ferritin/ribonucleotide reductase-like family protein;(source:Araport11)
TAIR Curator Summary: Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development.
TAIR Short Description: Ferritin/ribonucleotide reductase-like family protein
TAIR Aliases: ATTSO2, TSO2
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GO Term
GO:0007450 | dorsal/ventral pattern formation, imaginal disc
Description: The establishment, maintenance and elaboration of the dorsal/ventral axis of the imaginal disc. Imaginal disks are masses of hypodermic cells, carried by the larvae of some insects after leaving the egg, from which masses the wings and legs of the adult are subsequently formed.
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GO Term
GO:0007633 | pattern orientation
Description: The actions or reactions of an individual in response to the orientation of a visual pattern. This is exemplified by some classes of insects which are able to detect and learn the orientation of a set of stripes and subsequently behaviorally discriminate between horizontal, vertical or 45 degree stripes.
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GO Term
GO:0048190 | wing disc dorsal/ventral pattern formation
Description: The establishment, maintenance and elaboration of the dorsal/ventral axis of the wing disc, a precursor to the adult wing.
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Gene
AT3G49620 | locus:2114683 | DIN11 | DARK INDUCIBLE 11
Length: 3304  
Chromosome Location: Chr3: 18393747-18397050
Organism . Short Name: A. thaliana
TAIR Computational Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein;(source:Araport11)
TAIR Curator Summary: encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.
TAIR Short Description: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
TAIR Aliases: DIN11
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Gene
AT1G05830 | locus:2198743 | ATX2 | trithorax-like protein 2
Length: 7780  
Chromosome Location: Chr1: 1754130-1761909
Organism . Short Name: A. thaliana
TAIR Computational Description: trithorax-like protein 2;(source:Araport11)
TAIR Curator Summary: Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.
TAIR Short Description: trithorax-like protein 2
TAIR Aliases: ATX2, SDG30
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Ontology Term Synonym
Ontology Term Synonym
Name: effector triggered modulation of host process by symbiont
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: positive regulation of apoptosis triggered by ER stress
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: up regulation of apoptosis triggered by ER stress
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: down regulation of apoptosis triggered by ER stress
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: negative regulation of apoptosis triggered by ER stress
Type: synonym
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GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: FLS2 triggered activation of pathogenesis-related genes in Arabidopsis.
Organism: A. thaliana
Gene: FLS2
PubMed Id: 22080602
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GO Term
GO:0002228 | natural killer cell mediated immunity
Description: The promotion of an immune response by natural killer cells through direct recognition of target cells or through the release of cytokines.
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Ontology Term Synonym
Ontology Term Synonym
Name: NK cell mediated immunity
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: T lymphocyte mediated immunity
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: immune cell mediated immunity
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: myeloid leucocyte mediated immunity
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: PAMP-triggered immunity signalling pathway
Type: synonym
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Ontology Term Synonym
Ontology Term Synonym
Name: B lymphocyte mediated immunity
Type: synonym
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Gene
AT2G18510 | locus:2046298 | emb2444 | embryo defective 2444
Length: 2660  
Chromosome Location: Chr2: 8030960-8033619
Organism . Short Name: A. thaliana
TAIR Computational Description: RNA-binding (RRM/RBD/RNP motifs) family protein;(source:Araport11)
TAIR Curator Summary: Essential gene (embryo lethal) that is similar to component of splicosome. Regulates embryonic pattern formation through Pol II-Mediated transcription of WOX2 an PIN7 (DOI:10.1016/j.isci.2019.09.004). JANUS positively regulates PLT1 expression in the root meristem by recruiting RNA polymerase II (Pol II) to PLT1 and by interacting with PLT1. Nuclear accumulation of JANUS in root meristem depends on IMB4. (DOI:10.1105/tpc.20.00108 )
TAIR Short Description: RNA-binding (RRM/RBD/RNP motifs) family protein
TAIR Aliases: EMB2444, JANUS
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Gene
AT3G20840 | locus:2091891 | PLT1 | PLETHORA 1
Length: 3250  
Chromosome Location: Chr3: 7300444-7303693
Organism . Short Name: A. thaliana
TAIR Computational Description: Integrase-type DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.
TAIR Short Description: Integrase-type DNA-binding superfamily protein
TAIR Aliases: AtPLT1, PLT1
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Gene
AT4G32040 | locus:2116632 | KNAT5 | KNOTTED1-like homeobox gene 5
Length: 2393  
Chromosome Location: Chr4: 15493989-15496381
Organism . Short Name: A. thaliana
TAIR Computational Description: homeobox protein knotted-1-like 5;(source:Araport11)
TAIR Curator Summary: A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone.
TAIR Short Description: KNOTTED1-like homeobox gene 5
TAIR Aliases: KNAT5
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Gene
AT1G51190 | locus:2008216 | PLT2 | PLETHORA 2
Length: 3443  
Chromosome Location: Chr1: 18977176-18980618
Organism . Short Name: A. thaliana
TAIR Computational Description: Integrase-type DNA-binding superfamily protein;(source:Araport11)
TAIR Curator Summary: Encodes a member of the AINTEGUMENTA-like (AIL) subclass of the AP2/EREBP family of transcription factors and is essential for quiescent center (QC) specification and stem cell activity. It is a key effector for establishment of the stem cell niche during embryonic pattern formation. It is transcribed in response to auxin accumulation and is dependent on auxin response transcription factors.
TAIR Short Description: Integrase-type DNA-binding superfamily protein
TAIR Aliases: PLT2
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Protein Domain
IPR028276
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GO Term
GO:0007387 | anterior compartment pattern formation
Description: The process giving rise to specification of cell identity in the anterior compartments of the segmented embryo.
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GO Term
GO:0010051 | xylem and phloem pattern formation
Description: The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana.
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GO Term
GO:0021797 | forebrain anterior/posterior pattern specification
Description: The creation of specific areas of progenitor domains along the anterior-posterior axis of the developing forebrain.
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