help  | faq  | software  | BAR

Search our database by keyword

- or -

Examples

  • Search this entire website. Enter identifiers, names or keywords for genes, pathways, authors, ontology terms, etc. (e.g. eve, embryo, zen, allele)
  • Use OR to search for either of two terms (e.g. fly OR drosophila) or quotation marks to search for phrases (e.g. "dna binding").
  • Boolean search syntax is supported: e.g. dros* for partial matches or fly AND NOT embryo to exclude a term

Search results 201 to 300 out of 376 for Pattern triggered immunity

Category restricted to Generif (x)

<< First    < Previous  |  Next >    Last >>
0.045s

Categories

Category: Generif
« show all
Type Details Score
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SR1 plays an important role in plant immunity and ethylene signaling by directly regulating NDR1 and EIN3.
Organism: A. thaliana
Gene: NDR1
PubMed Id: 22345509
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SR1 plays an important role in plant immunity and ethylene signaling by directly regulating NDR1 and EIN3.
Organism: A. thaliana
Gene: EIN3
PubMed Id: 22345509
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The receptor-like cytoplasmic kinase CDG1 negatively regulates Arabidopsis pattern-triggered immunity and is involved in AvrRpm1-induced RIN4 phosphorylation.
Organism: A. thaliana
Gene: RIN4
PubMed Id: 33619522
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The receptor-like cytoplasmic kinase CDG1 negatively regulates Arabidopsis pattern-triggered immunity and is involved in AvrRpm1-induced RIN4 phosphorylation.
Organism: A. thaliana
Gene: CDG1
PubMed Id: 33619522
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: HOS15 and HDA9 negatively regulate immunity through histone deacetylation of intracellular immune receptor NLR genes in Arabidopsis.
Organism: A. thaliana
Gene: HDA9
PubMed Id: 31854111
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: PRX33/PRX34-generated reactive oxygen species production is involved in the orchestration of pattern-triggered immunity in tissue culture cells.
Organism: A. thaliana
Gene: PRXCA
PubMed Id: 22319074
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: PRX33/PRX34-generated reactive oxygen species production is involved in the orchestration of pattern-triggered immunity in tissue culture cells.
Organism: A. thaliana
Gene: PRXCB
PubMed Id: 22319074
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis ARF-GTP exchange factor, GNOM, mediates transport required for innate immunity and focal accumulation of syntaxin PEN1
Organism: A. thaliana
Gene: PEN1
PubMed Id: 22733775
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Results indicate that brassinosteroid-signaling kinase 1 (BSK1) regulates plant immunity by phosphorylating MAPK Kinase Kinase 5 (MAPKKK5).
Organism: A. thaliana
Gene: BSK1
PubMed Id: 29440595
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: EDR4 associates with CHC2 and modulates plant immunity by regulating the relocation of EDR1 in Arabidopsis. [EDR4]
Organism: A. thaliana
Gene: AT5G05190
PubMed Id: 25747881
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Results indicate that brassinosteroid-signaling kinase 1 (BSK1) regulates plant immunity by phosphorylating MAPK Kinase Kinase 5 (MAPKKK5).
Organism: A. thaliana
Gene: MAPKKK5
PubMed Id: 29440595
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: HOS15 and HDA9 negatively regulate immunity through histone deacetylation of intracellular immune receptor NLR genes in Arabidopsis.
Organism: A. thaliana
Gene: HOS15
PubMed Id: 31854111
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis CURLY LEAF functions in leaf immunity against fungal pathogens by concomitantly repressing SEPALLATA3 and activating ORA59.
Organism: A. thaliana
Gene: ORA59
PubMed Id: 34506685
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis ARF-GTP exchange factor, GNOM, mediates transport required for innate immunity and focal accumulation of syntaxin PEN1
Organism: A. thaliana
Gene: GN
PubMed Id: 22733775
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: BES1 is identified as a unique direct substrate of MPK6 in Pathogen-associated molecular patterns (PAMP)-triggered immunity signaling.
Organism: A. thaliana
Gene: BES1
PubMed Id: 25609555
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis CURLY LEAF functions in leaf immunity against fungal pathogens by concomitantly repressing SEPALLATA3 and activating ORA59.
Organism: A. thaliana
Gene: SEP3
PubMed Id: 34506685
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Findings indicate that while phot1-5/phot2-1 plants also responded to changes in light intensity, the resulting pattern of chloroplast distribution was quite different from that in WT.
Organism: A. thaliana
Gene: PHOT1
PubMed Id: 20614182
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: studies show that CBP60g constitutes a Ca(2+) link between microbe-associated molecular pattern (MAMP) recognition and salicylic acid accumulation that is important for resistance to Pseudomonas syringae
Organism: A. thaliana
Gene: CBP60G
PubMed Id: 19214217
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: MYB23 participates in a positive feedback loop to reinforce cell fate decisions and ensure robust establishment of the cell type pattern in the Arabidopsis root epidermis.
Organism: A. thaliana
Gene: MYB23
PubMed Id: 19395683
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Findings indicate that while phot1-5/phot2-1 plants also responded to changes in light intensity, the resulting pattern of chloroplast distribution was quite different from that in WT.
Organism: A. thaliana
Gene: PHOT2
PubMed Id: 20614182
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The spatial pattern of CTL1 expression was mainly in the root and root tips during seedling development and that the protein localized to the cell wall.
Organism: A. thaliana
Gene: POM1
PubMed Id: 21949212
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: At least two independent regions of the INO promoter contain sufficient regulatory information to direct the specific pattern but not the level of INO gene expression.
Organism: A. thaliana
Gene: INO
PubMed Id: 23148487
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Negative regulation of PAMP-triggered immunity by an E3 ubiquitin ligase triplet (PUB22, PUB23, and PUB24) in Arabidopsis. [PUB23]
Organism: A. thaliana
Gene: PUB23
PubMed Id: 18771922
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The TIR-NBS protein TN13 associates with the CC-NBS-LRR resistance protein RPS5 and contributes to RPS5-triggered immunity in Arabidopsis.
Organism: A. thaliana
Gene: AT3G04210
PubMed Id: 33982335
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Negative regulation of PAMP-triggered immunity by an E3 ubiquitin ligase (PUB22, PUB23, and PUB24) triplet in Arabidopsis. [PUB24]
Organism: A. thaliana
Gene: PUB24
PubMed Id: 18771922
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The Arabidopsis miR472-RDR6 silencing pathway modulates PAMP- and effector-triggered immunity through the post-transcriptional control of disease resistance genes.
Organism: A. thaliana
Gene: RDR6
PubMed Id: 24453975
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Negative regulation of PAMP-triggered immunity by an E3 ubiquitin ligase triplet (PUB22, PUB23, and PUB24) in Arabidopsis. [PUB22]
Organism: A. thaliana
Gene: PUB22
PubMed Id: 18771922
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The TIR-NB-LRR pair DSC1 and WRKY19 contributes to basal immunity of Arabidopsis to the root-knot nematode Meloidogyne incognita.
Organism: A. thaliana
Gene: AT4G12010
PubMed Id: 32054439
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: findings show that azelaic acid and AZI1 (At4g12470) are components of plant systemic immunity involved in priming defenses
Organism: A. thaliana
Gene: AZI1
PubMed Id: 19342588
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Role of AT1G72910, AT1G72940, and ADR1-LIKE 2 in Plant Immunity under Nonsense-Mediated mRNA Decay-Compromised Conditions at Low Temperatures.
Organism: A. thaliana
Gene: ADR1-L2
PubMed Id: 33121126
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis downy mildew effector HaRxLL470 suppresses plant immunity by attenuating the DNA-binding activity of bZIP transcription factor HY5.
Organism: A. thaliana
Gene: HY5
PubMed Id: 33586184
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The TIR-NBS protein TN13 associates with the CC-NBS-LRR resistance protein RPS5 and contributes to RPS5-triggered immunity in Arabidopsis.
Organism: A. thaliana
Gene: RPS5
PubMed Id: 33982335
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SIK1 positively regulates immunity by stabilizing BIK1 and activating RBOHD to promote the extracellular reactive oxygen species burst.
Organism: A. thaliana
Gene: SIK1
PubMed Id: 30212650
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Role of AT1G72910, AT1G72940, and ADR1-LIKE 2 in Plant Immunity under Nonsense-Mediated mRNA Decay-Compromised Conditions at Low Temperatures.
Organism: A. thaliana
Gene: AT1G72910
PubMed Id: 33121126
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Role of AT1G72910, AT1G72940, and ADR1-LIKE 2 in Plant Immunity under Nonsense-Mediated mRNA Decay-Compromised Conditions at Low Temperatures.
Organism: A. thaliana
Gene: AT1G72940
PubMed Id: 33121126
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: BZR1 acts as an important regulator mediating the trade-off between growth and immunity upon integration of environmental cues
Organism: A. thaliana
Gene: BZR1
PubMed Id: 24381244
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Results indicate that the ER-located transcription factors bZIP17 and bZIP60 play a role in salt stress but this response goes through a signaling pathway that is different to that triggered by the unfolded protein response.
Organism: A. thaliana
Gene: BZIP17
PubMed Id: 25704669
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: NTL6 activation is triggered by exposure to cold, and the transcriptionally active form of NTL6 induces the expression of PR genes by directly binding to the gene promoters and enhances plant resistance to pathogen infection.
Organism: A. thaliana
Gene: NAC062
PubMed Id: 19947982
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Results indicate that the ER-located transcription factors bZIP17 and bZIP60 play a role in salt stress but this response goes through a signaling pathway that is different to that triggered by the unfolded protein response.
Organism: A. thaliana
Gene: BZIP60
PubMed Id: 25704669
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: A ccs52A2 mutation did not affect the level or pattern of cyclin B1;1 expression, indicating that CCS52A2 does not mediate the effect of auxin on cyclin B1;1.
Organism: A. thaliana
Gene: CCS52A2
PubMed Id: 26662023
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: pre-mRNA splicing plays important roles in the regulation of plant immunity mediated by the receptor-like kinases SNC4 and CERK1
Organism: A. thaliana
Gene: CERK1
PubMed Id: 25267732
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The TIR-NB-LRR pair DSC1 and WRKY19 contributes to basal immunity of Arabidopsis to the root-knot nematode Meloidogyne incognita. [WRKY19]
Organism: A. thaliana
Gene: WRKY19
PubMed Id: 32054439
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SIZ1 is required for salicylic acid and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis.[SIZ1]
Organism: A. thaliana
Gene: SIZ1
PubMed Id: 17163880
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: pre-mRNA splicing plays important roles in the regulation of plant immunity mediated by the receptor-like kinases SNC4 and CERK1
Organism: A. thaliana
Gene: SNC4
PubMed Id: 25267732
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: A Truncated TIR-NBS Protein TN10 Pairs with Two Clustered TIR-NBS-LRR Immune Receptors and Contributes to Plant Immunity in Arabidopsis.
Organism: A. thaliana
Gene: TIR
PubMed Id: 33924478
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: A severe case of hybrid necrosis in A. thaliana, where the hybrids show global NLR hyperinduction triggered by the interaction of DM10, a relocated singleton NLR gene, and DM11, an unlinked locus in chromosome 1. [DM10]
Organism: A. thaliana
Gene: AT5G58120
PubMed Id: 32966577
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Data showed that CML8, an Arabidopsis calcium sensor belonging to the calmodulin-like (CML) protein family, promotes plant immunity against the phytopathogenic bacteria Pseudomonas syringae pv tomato (strain DC3000). Interestingly, other CML proteins such as CML9 were also reported to contribute to plant immunity using the same pathosystem
Organism: A. thaliana
Gene: CAM9
PubMed Id: 28471263
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Data showed that CML8, an Arabidopsis calcium sensor belonging to the calmodulin-like (CML) protein family, promotes plant immunity against the phytopathogenic bacteria Pseudomonas syringae pv tomato (strain DC3000). Interestingly, other CML proteins such as CML9 were also reported to contribute to plant immunity using the same pathosystem
Organism: A. thaliana
Gene: CAM8
PubMed Id: 28471263
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The temporal and spatial expression pattern of CYCB1;4 suggests that this gene may function in both maternal tissues and zygotic tissues to coordinate the final size of seeds.
Organism: A. thaliana
Gene: CYCB1;4
PubMed Id: 30556142
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: P5CS1 and P5CS2 are expressed at similar levels and with the same pattern of expression in vegetative and floral shoot apical meristems as well as in axillary meristems.
Organism: A. thaliana
Gene: P5CS1
PubMed Id: 19627555
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Data indicate that double mutations in the AtISWI genes, CHROMATIN REMODELING 11 (CHR11) and CHR17, resulted in the loss of the evenly spaced nucleosome pattern in gene bodies.
Organism: A. thaliana
Gene: CHR11
PubMed Id: 24606212
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Authors demonstrate that recognition of the flagellin peptide microbe-associated molecular pattern flg22 triggers accumulation of RIN4 phosphorylated at serine 141 (pS141) that mediates derepression of several immune outputs.
Organism: A. thaliana
Gene: RIN4
PubMed Id: 25299334
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: P5CS1 and P5CS2 are expressed at similar levels and with the same pattern of expression in vegetative and floral shoot apical meristems as well as in axillary meristems.
Organism: A. thaliana
Gene: P5CS2
PubMed Id: 19627555
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Our data indicate that such bulge modulates the strength of the miR396-mediated repression and that this modulation is essential to shape the precise spatio-temporal pattern of GRF2 expression
Organism: A. thaliana
Gene: GRF2
PubMed Id: 22242012
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Data indicate that double mutations in the AtISWI genes, CHROMATIN REMODELING 11 (CHR11) and CHR17, resulted in the loss of the evenly spaced nucleosome pattern in gene bodies.
Organism: A. thaliana
Gene: CHR17
PubMed Id: 24606212
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The expression pattern and mutant phenotype of AGL61 are similar to those of AGL80, suggesting that AGL61 may function as a heterodimer with AGL80 within the central cell.
Organism: A. thaliana
Gene: AGL80
PubMed Id: 18599653
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Data show that the MIR165a and 166a genes are predominantly transcribed in the abaxial epidermis, and this transcript distribution pattern is controlled by two types of cis-acting elements.
Organism: A. thaliana
Gene: MIR165A
PubMed Id: 19879265
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: BIK1 mediates inverse functions in plant immunity and development via dynamic association with specific receptor complexes and differential phosphorylation events.
Organism: A. thaliana
Gene: BIK1
PubMed Id: 23818580
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Direct acetylation of a conserved threonine of RIN4 by the bacterial effector HopZ5 or AvrBsT activates RPM1-dependent immunity in Arabidopsis.
Organism: A. thaliana
Gene: RPM1
PubMed Id: 34329778
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Direct acetylation of a conserved threonine of RIN4 by the bacterial effector HopZ5 or AvrBsT activates RPM1-dependent immunity in Arabidopsis.
Organism: A. thaliana
Gene: RIN4
PubMed Id: 34329778
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AZI1 is involved in defense priming in systemic plant immunity and was down-regulated in leaves by biotic and abiotic stresses.
Organism: A. thaliana
Gene: AZI1
PubMed Id: 23800991
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: PTRE1 acts as a negative regulator of plant immunity partly by facilitating the degradation of immune receptors such as SNC1.
Organism: A. thaliana
Gene: SNC1
PubMed Id: 31393057
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: LecRK-VI.2 is a positive regulator of the Arabidopsis pattern-triggered immunity response to bacterial pathogens and a critical modulator of priming.
Organism: A. thaliana
Gene: LECRKA4.1
PubMed Id: 22427336
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: LTP3 is a novel negative regulator of plant immunity which acts through the manipulation of the abscissic acid-salicylic acid balance.
Organism: A. thaliana
Gene: LTP3
PubMed Id: 26123657
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Arabidopsis clathrin adaptor EPSIN1 but not MODIFIED TRANSPORT TO THE VACOULE1 contributes to effective plant immunity against pathogenic Pseudomonas bacteria.
Organism: A. thaliana
Gene: EPS1
PubMed Id: 36603596
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: the E3 ligase SAUL1 serves as a positive regulator of PAMP-triggered immunity and its homeostasis is monitored by the SOC3.[SOC3]
Organism: A. thaliana
Gene: AT1G17600
PubMed Id: 28691210
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: the E3 ligase SAUL1 serves as a positive regulator of PAMP-triggered immunity and its homeostasis is monitored by the SOC3.
Organism: A. thaliana
Gene: SAUL1
PubMed Id: 28691210
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Data demonstrates that AtERF014 acts as a dual regulator that differentially modulates immunity against Pst and Bc in Arabidopsis. [AtERF014]
Organism: A. thaliana
Gene: AT1G44830
PubMed Id: 27445230
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: PTRE1 acts as a negative regulator of plant immunity partly by facilitating the degradation of immune receptors such as SNC1.[PTRE1]
Organism: A. thaliana
Gene: AT1G48530
PubMed Id: 31393057
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: WRKY60 interacts both physically and functionally with WRKY40 and WRKY18 in a complex pattern of overlapping, antagonistic, and distinct roles in plant responses to different types of microbial pathogens.
Organism: A. thaliana
Gene: WRKY60
PubMed Id: 16603654
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: WRKY18 interacts both physically and functionally with WRKY40 and WRKY60 in a complex pattern of overlapping, antagonistic, and distinct roles in plant responses to different types of microbial pathogens.
Organism: A. thaliana
Gene: WRKY18
PubMed Id: 16603654
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: TRB1 shows a specific genome-wide distribution pattern which suggests its role in regulation of genes involved in biogenesis of the translational machinery, in addition to its preferential telomeric localization.
Organism: A. thaliana
Gene: TRB1
PubMed Id: 26597966
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: WRKY40 interacts both physically and functionally with WRKY18 and WRKY60 in a complex pattern of overlapping, antagonistic, and distinct roles in plant responses to different types of microbial pathogens.
Organism: A. thaliana
Gene: WRKY40
PubMed Id: 16603654
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Light was efficiently conducted through the stems to the roots, where photoactivated phytochrome B (phyB) triggered expression of ELONGATED HYPOCOTYL 5 (HY5) and accumulation of HY5 protein, a transcription factor that promotes root growth in response to light.
Organism: A. thaliana
Gene: PHYB
PubMed Id: 27803284
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: It was found that all tested variants of AVR3a suppress defense responses triggered by flg22 and reduce internalization of activated FLS2. Moreover, AVR3a associates with the Dynamin-Related Protein 2 (DRP2), a plant GTPase implicated in receptor-mediated endocytosis. [DRP2A]
Organism: A. thaliana
Gene: ADL6
PubMed Id: 26348328
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: It was found that all tested variants of AVR3a suppress defense responses triggered by flg22 and reduce internalization of activated FLS2. Moreover, AVR3a associates with the Dynamin-Related Protein 2 (DRP2), a plant GTPase implicated in receptor-mediated endocytosis. [DRP2B]
Organism: A. thaliana
Gene: DL3
PubMed Id: 26348328
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Results show that CERK1 is a determinant of bacterial immunity in Arabidopsis, but its contribution is overcome by bacteria expressing AvrPtoB.
Organism: A. thaliana
Gene: CERK1
PubMed Id: 19249211
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Infection of Arabidopsis by cucumber mosaic virus triggers jasmonate-dependent resistance to aphids that relies partly on the pattern-triggered immunity factor BAK1.
Organism: A. thaliana
Gene: BAK1
PubMed Id: 34156752
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: SRFR1 is a single-copy gene encoding a conserved tetratricopeptide repeat protein, and is a negative regulator of effector-triggered immunity to avrRps4.
Organism: A. thaliana
Gene: SRFR1
PubMed Id: 18774967
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: these findings further substantiate the role of BSK5 in plant immunity and illustrate its potential use for improving plant disease resistance.
Organism: A. thaliana
Gene: BSK5
PubMed Id: 31262220
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AtPAM16 seems to be involved in mitochondria-mediated plant immunity thus protecting plants from over-accumulation of reactive oxygen species and preventing autoimmunity.
Organism: A. thaliana
Gene: AT5G61880
PubMed Id: 24153405
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The subcellular localization of Arabidopsis thaliana HMGA, HMGB1, and HMGB5, reveals that they localize to the cell nucleus. They display a speckled distribution pattern throughout the chromatin of interphase nuclei.
Organism: A. thaliana
Gene: HMGB1
PubMed Id: 17114349
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study report the gene expression pattern and subcellular localization of MOS1. In addition, study analyzes and discusses the roles of DNA and histone methylation in mos1-mediated suppression of SNC1 expression.
Organism: A. thaliana
Gene: SNC1
PubMed Id: 21350329
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study report the gene expression pattern and subcellular localization of MOS1. In addition, study analyzes and discusses the roles of DNA and histone methylation in mos1-mediated suppression of SNC1 expression.
Organism: A. thaliana
Gene: MOS1
PubMed Id: 21350329
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: AGB1 appears to integrate pathogen-associated molecular pattern perception into downstream ROS production, and also to transmit the EF-Tu signal to the defense response, leading to reduced transformation by A. tumefaciens.
Organism: A. thaliana
Gene: AGB1
PubMed Id: 19129659
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The subcellular localization of Arabidopsis thaliana HMGA, HMGB1, and HMGB5, reveals that they localize to the cell nucleus. They display a speckled distribution pattern throughout the chromatin of interphase nuclei.
Organism: A. thaliana
Gene: HMGB5
PubMed Id: 17114349
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The subcellular localization of Arabidopsis thaliana HMGA, HMGB1, and HMGB5, reveals that they localize to the cell nucleus. They display a speckled distribution pattern throughout the chromatin of interphase nuclei.
Organism: A. thaliana
Gene: HMGA
PubMed Id: 17114349
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Our findings suggest a common mechanism for the regulation of PIN1 polarity formation, a fundamental cellular process that is crucial for pattern formation both at the tissue/organ and cellular levels
Organism: A. thaliana
Gene: PIN1
PubMed Id: 21423279
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: Study uncovered the truncated NLR protein TN13 as a component of plant innate immunity that selectively binds to MOS6/IMPORTIN-alpha3 in planta. [TIR-NBS13]
Organism: A. thaliana
Gene: AT3G04210
PubMed Id: 28901644
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: ATL31 plays an important role in connecting the Carbon/Nitrogen response with basal immunity by promoting papilla formation through its association with SYP121.
Organism: A. thaliana
Gene: SYP121
PubMed Id: 24394775
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: DCL2/4-dependent and -independent RNA silencing pathways are involved, and may crosstalk with basal innate immunity pathways, in host defense and in cross-protection.
Organism: A. thaliana
Gene: DCL2
PubMed Id: 24804808
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This work identifies PP2A as an important negative regulator of plant innate immunity that controls BAK1 activation in surface-localized immune receptor complexes.
Organism: A. thaliana
Gene: BAK1
PubMed Id: 25085430
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The pathogenic Pseudomonas syringae effector AvrPphB cleaves the Arabidopsis receptor-like cytoplasmic kinase PBS1 to trigger cytoplasmic immune receptor RPS5-specified effector-triggered immunity (ETI).
Organism: A. thaliana
Gene: PBS1
PubMed Id: 20413097
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: DCL2/4-dependent and -independent RNA silencing pathways are involved, and may crosstalk with basal innate immunity pathways, in host defense and in cross-protection.
Organism: A. thaliana
Gene: DCL4
PubMed Id: 24804808
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: ATL31 plays an important role in connecting the Carbon/Nitrogen response with basal immunity by promoting papilla formation through its association with SYP121.
Organism: A. thaliana
Gene: CNI1
PubMed Id: 24394775
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: The pathogenic Pseudomonas syringae effector AvrPphB cleaves the Arabidopsis receptor-like cytoplasmic kinase PBS1 to trigger cytoplasmic immune receptor RPS5-specified effector-triggered immunity (ETI).
Organism: A. thaliana
Gene: RPS5
PubMed Id: 20413097
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: This work identifies PP2A as an important negative regulator of plant innate immunity that controls BAK1 activation in surface-localized immune receptor complexes.
Organism: A. thaliana
Gene: PP2A
PubMed Id: 25085430
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: BLI colocalizes with CLF in the nucleus, shows an overlapping expression pattern with CLF throughout plant development that is strongest in dividing cells, and represses a subset of Pc-G target genes
Organism: A. thaliana
Gene: CLF
PubMed Id: 20647345
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: ATS and ETT were found to share an overlapping expression pattern during Arabidopsis ovule development and loss of either gene resulted in congenital fusion of the integuments and altered seed morphology.
Organism: A. thaliana
Gene: ETT
PubMed Id: 22296848
•
•
•
•
•
GeneRIF (Gene Reference into Function)
GeneRIF (Gene Reference into Function)
Annotation: data indicate that AtRHD6(At1g66470)and AtRSL1 (At5G37800) are bHLH transcription factors that are specifically required for the development of root hairs and act downstream of the genes that regulate epidermal pattern formation
Organism: A. thaliana
Gene: RSL1
PubMed Id: 17556585
•
•
•
•
•





BAR logo CAGEF logo CAGEF logo Araport logo JCVI logo TACC logo

InterMine is funded by the and interoperation is funded by

© 2002 - 2021 Department of Genetics, University of Cambridge, Downing Street,
Cambridge CB2 3EH, United Kingdom