Type |
Details |
Score |
Ontology Term Synonym |
Name: |
effector triggered immunity |
Type: |
synonym |
|
•
•
•
•
•
|
Gene |
Length: |
889
|
Chromosome Location: |
Chr5: 15883179-15884067 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Calcium-binding EF-hand family protein;(source:Araport11) |
TAIR Curator Summary: |
Calmodulin like protein involved in negative regulation of pattern triggered immunity. |
TAIR Short Description: |
Calcium-binding EF-hand family protein |
TAIR Aliases: |
CML46 |
|
•
•
•
•
•
|
Gene |
Length: |
5334
|
Chromosome Location: |
Chr5: 9189425-9194758 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
chloride channel D;(source:Araport11) |
TAIR Curator Summary: |
Anion channel protein family member. Involved in negative regulation of pattern triggered immunity. |
TAIR Short Description: |
chloride channel D |
TAIR Aliases: |
ATCLC-D, AtCLCd, CLC-D, CLCd |
|
•
•
•
•
•
|
Gene |
Length: |
7087
|
Chromosome Location: |
Chr5: 6146725-6153811 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
protein serine/threonine kinase;(source:Araport11) |
TAIR Curator Summary: |
Encodes a BEACH domain containing protein that is involved in targeting storage proteins to the protein storage vacuoles and effector triggered immunity to Psuedomonas syringae. |
TAIR Short Description: |
protein serine/threonine kinases;protein tyrosine kinases;ATP binding;protein kinases |
TAIR Aliases: |
gfs12 |
|
•
•
•
•
•
|
Publication |
First Author: |
Igarashi D |
Title: |
Pattern-triggered immunity suppresses programmed cell death triggered by fumonisin b1. |
Year: |
2013 |
Journal: |
PLoS One |
Volume: |
8 |
Pages: |
e60769 |
|
•
•
•
•
•
|
Gene |
Length: |
4639
|
Chromosome Location: |
Chr1: 1607202-1611840 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
DNAse I-like superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes an inositol polyphosphate 5' phosphatase (5PTase) that is required for the proper recruitment of cells into developing vascular tissue in leaves and cotyledons. It is most similar to Type I 5PTases that are known to cleave a phosphate from IP3 or IP4. cvp2 mutants have elevated levels of IP3 and are hypersensitive to ABA in seed germination assays. |
TAIR Short Description: |
DNAse I-like superfamily protein |
TAIR Aliases: |
CVP2 |
|
•
•
•
•
•
|
GO Term |
Description: |
The series of molecular signals initiated by a ligand binding of a pattern recognition receptor (PRR) to activate a plant innate immune response. PAMP-triggered immunity PRRs bind pathogen-associated molecular pattern (PAMPs), structures conserved among microbial species. |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
AtCLCd negatively regulates pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI). |
Organism: |
A. thaliana |
Gene: |
CLC-D |
PubMed Id: |
24449384 |
|
•
•
•
•
•
|
Gene |
Length: |
2598
|
Chromosome Location: |
Chr5: 18855955-18858552 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein;(source:Araport11) |
TAIR Curator Summary: |
NULL |
TAIR Short Description: |
NULL |
|
|
•
•
•
•
•
|
Publication |
First Author: |
Sun A |
Title: |
Nitric oxide-mediated maintenance of redox homeostasis contributes to NPR1-dependent plant innate immunity triggered by lipopolysaccharides. |
Year: |
2012 |
Journal: |
Plant Physiol |
Volume: |
160 |
Pages: |
1081-96 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
SOBER1 is required for the suppression of bacterial effector HopZ5-triggered immunity in Arabidopsis.SOBER1 suppresses immunity triggered by multiple bacterial acetyltransferases. |
Organism: |
A. thaliana |
Gene: |
SOBER1 |
PubMed Id: |
29577317 |
|
•
•
•
•
•
|
Gene |
Length: |
2294
|
Chromosome Location: |
Chr3: 10667135-10669428 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Leucine-rich repeat protein kinase family protein;(source:Araport11) |
TAIR Curator Summary: |
Negative regulator of pattern-triggered immunity in complex with BIR3 and PLDγ1. |
TAIR Short Description: |
Leucine-rich repeat protein kinase family protein |
TAIR Aliases: |
BIR2 |
|
•
•
•
•
•
|
Gene |
Length: |
1328
|
Chromosome Location: |
Chr3: 19163995-19165322 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Tautomerase/MIF superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Chemokine-like MDL protein; modulate flowering time and innate immunity in plants. |
TAIR Short Description: |
Tautomerase/MIF superfamily protein |
TAIR Aliases: |
MDL3 |
|
•
•
•
•
•
|
Gene |
Length: |
1662
|
Chromosome Location: |
Chr5: 242450-244111 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Tautomerase/MIF superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Chemokine-like MDL protein; modulate flowering time and innate immunity in plants. |
TAIR Short Description: |
Tautomerase/MIF superfamily protein |
TAIR Aliases: |
MDL2 |
|
•
•
•
•
•
|
Publication |
First Author: |
Choi S |
Title: |
Arabidopsis thaliana SOBER1 (SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1) suppresses plant immunity triggered by multiple bacterial acetyltransferase effectors. |
Year: |
2018 |
Journal: |
New Phytol |
Volume: |
219 |
Pages: |
324-335 |
|
•
•
•
•
•
|
Gene |
Length: |
3760
|
Chromosome Location: |
Chr4: 16112624-16116383 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Protein phosphatase 2C family protein;(source:Araport11) |
TAIR Curator Summary: |
Protein phosphatase 2C family protein. Loss of function enhances immunity to bacterial pathogens. |
TAIR Short Description: |
Protein phosphatase 2C family protein |
TAIR Aliases: |
PP2C62 |
|
•
•
•
•
•
|
Gene |
Length: |
2034
|
Chromosome Location: |
Chr1: 21884018-21886051 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
mitogen-activated protein kinase homolog 2;(source:Araport11) |
TAIR Curator Summary: |
encodes a mitogen-activated kinase involved in innate immunity The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
mitogen-activated protein kinase homolog 2 |
TAIR Aliases: |
ATMPK2, MPK2 |
|
•
•
•
•
•
|
Gene |
Length: |
1739
|
Chromosome Location: |
Chr5: 17951442-17953180 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
TAIR Curator Summary: |
SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
PROSCOOP1 |
|
•
•
•
•
•
|
Gene |
Length: |
1273
|
Chromosome Location: |
Chr5: 17953282-17954554 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
hypothetical protein;(source:Araport11) |
TAIR Curator Summary: |
SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
PROSCOOP2 |
|
•
•
•
•
•
|
Gene |
Length: |
2251
|
Chromosome Location: |
Chr5: 17968092-17970342 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
TAIR Curator Summary: |
SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
PROSCOOP6 |
|
•
•
•
•
•
|
Gene |
Length: |
1247
|
Chromosome Location: |
Chr5: 17970210-17971456 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
TAIR Curator Summary: |
SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
PROSCOOP7 |
|
•
•
•
•
•
|
Gene |
Length: |
1346
|
Chromosome Location: |
Chr5: 17973775-17975120 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
hypothetical protein;(source:Araport11) |
TAIR Curator Summary: |
SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
PROSCOOP8 |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
GO Term |
Description: |
A plant complex involved in basal disease resistance and resistance (R) gene-mediated effector triggered immunity (ETI). Regulates accumulation of the hormone salicylic acid (SA) which is a necessary component of systemic immunity. Involved in responds to bacteria, viruses and oomycetes. |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
RAR1 molecularly links pathogen-associated molecular pattern (PAMP)-triggered immunity, effector virulence, and effector-triggered immunity |
Organism: |
A. thaliana |
Gene: |
PBS2 |
PubMed Id: |
17148606 |
|
•
•
•
•
•
|
Gene |
Length: |
1702
|
Chromosome Location: |
Chr3: 8309209-8310910 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
myb domain protein 15;(source:Araport11) |
TAIR Curator Summary: |
Member of the R2R3 factor gene family. Key regulator of lignin biosynthesis in effector-triggered immunity |
TAIR Short Description: |
myb domain protein 15 |
TAIR Aliases: |
ATMYB15, ATY19, MYB15 |
|
•
•
•
•
•
|
Gene |
Length: |
2303
|
Chromosome Location: |
Chr5: 8854507-8856809 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Protein kinase superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Receptor like kinase involved in HopZ1a effector triggered immunity. Interacts with ZAR1. Localization to membrane is dependent on N-terminal myristoylation domain. |
TAIR Short Description: |
Protein kinase superfamily protein |
TAIR Aliases: |
SZE1 |
|
•
•
•
•
•
|
Gene |
Length: |
3296
|
Chromosome Location: |
Chr2: 864997-868292 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence. |
TAIR Short Description: |
GDA1/CD39 nucleoside phosphatase family protein |
TAIR Aliases: |
APY6, AtAPY6 |
|
•
•
•
•
•
|
Gene |
Length: |
3419
|
Chromosome Location: |
Chr4: 10485116-10488534 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
GDA1/CD39 nucleoside phosphatase family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a putative apyrase involved in pollen exine pattern formation and anther dehiscence. |
TAIR Short Description: |
GDA1/CD39 nucleoside phosphatase family protein |
TAIR Aliases: |
APY7, AtAPY7 |
|
•
•
•
•
•
|
Gene |
Length: |
2274
|
Chromosome Location: |
Chr3: 22052121-22054394 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
lectin-receptor kinase;(source:Araport11) |
TAIR Curator Summary: |
Member of Receptor kinase-like protein family. Represses stomatal immunity induced by Pseudomonas syringae pv. tomato DC3000. |
TAIR Short Description: |
lectin-receptor kinase |
TAIR Aliases: |
ATHLECRK, HLECRK, LecRK-V.5, LECRK1 |
|
•
•
•
•
•
|
Gene |
Length: |
5233
|
Chromosome Location: |
Chr3: 2782698-2787930 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
defective in exine formation protein (DEX1);(source:Araport11) |
TAIR Curator Summary: |
Encodes DEX1 (defective in exine formation). Required for exine pattern formation during pollen development. |
TAIR Short Description: |
defective in exine formation protein (DEX1) |
TAIR Aliases: |
DEX1 |
|
•
•
•
•
•
|
Gene |
Length: |
3423
|
Chromosome Location: |
Chr5: 18615175-18618597 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
ThiF family protein;(source:Araport11) |
TAIR Curator Summary: |
Component of autophagy conjugation pathway. Required for proper senescence. Contributes to plant basal immunity towards fungal infection. |
TAIR Short Description: |
ThiF family protein |
TAIR Aliases: |
APG7, ATAPG7, ATATG7, ATG7, PEUP4 |
|
•
•
•
•
•
|
Publication |
First Author: |
Guo W |
Title: |
The chloride channel family gene CLCd negatively regulates pathogen-associated molecular pattern (PAMP)-triggered immunity in Arabidopsis. |
Year: |
2014 |
Journal: |
J Exp Bot |
Volume: |
65 |
Pages: |
1205-15 |
|
•
•
•
•
•
|
Gene |
Length: |
4581
|
Chromosome Location: |
Chr4: 7196991-7201571 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Disease resistance protein (TIR-NBS-LRR class) family;(source:Araport11) |
TAIR Curator Summary: |
Leucine-rich repeat domain (NLR) receptor. Dominant negative alleles suppress catma3 autoimmunity. Co-regulates with WRKY19 basal levels of immunity to root-knot nematodes. |
TAIR Short Description: |
Disease resistance protein (TIR-NBS-LRR class) family |
TAIR Aliases: |
DSC1 |
|
•
•
•
•
•
|
Publication |
First Author: |
Tintor N |
Title: |
Layered pattern receptor signaling via ethylene and endogenous elicitor peptides during Arabidopsis immunity to bacterial infection. |
Year: |
2013 |
Journal: |
Proc Natl Acad Sci U S A |
Volume: |
110 |
Pages: |
6211-6 |
|
•
•
•
•
•
|
Gene |
Length: |
1241
|
Chromosome Location: |
Chr1: 26161551-26162791 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Natural antisense transcript overlaps with AT1G69570;(source:Araport11) |
TAIR Curator Summary: |
Circadian regulated lncRNA, natural antisense gene of CDF5 (AT1G69570). Displays antiphasic expression pattern in relation to CDF5 expression (PMID:28758689). |
TAIR Short Description: |
other RNA |
TAIR Aliases: |
FLORE |
|
•
•
•
•
•
|
Gene |
Length: |
1810
|
Chromosome Location: |
Chr5: 17753959-17755768 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
P-loop containing nucleoside triphosphate hydrolases superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a member of the NAP subfamily of ABC transporters whose expression pattern is regulated by light and sucrose. |
TAIR Short Description: |
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
TAIR Aliases: |
ABCI21, ATNAP2, ATPOP1, POP1 |
|
•
•
•
•
•
|
Gene |
Length: |
2614
|
Chromosome Location: |
Chr3: 3016490-3019103 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Protein kinase superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a member of subfamily VIIa of the receptor-like cytoplasmic kinases (RLCKs). It contributes to pattern-triggered immunity in response to P. syringae. |
TAIR Short Description: |
Protein kinase superfamily protein |
TAIR Aliases: |
PBL39, PCRK1 |
|
•
•
•
•
•
|
Gene |
Length: |
3506
|
Chromosome Location: |
Chr5: 23314672-23318177 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Calmodulin-binding protein;(source:Araport11) |
TAIR Curator Summary: |
Required for the expression of a guardee/decoy or a negative regulator of immunity mediated by receptors carrying an N-terminal Toll-interleukin-1 receptor-like domain. |
TAIR Short Description: |
Calmodulin-binding protein |
TAIR Aliases: |
CBP60b |
|
•
•
•
•
•
|
GO Term |
Description: |
Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate. |
|
•
•
•
•
•
|
Gene |
Length: |
1895
|
Chromosome Location: |
Chr4: 14881689-14883583 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
UDP-D-glucuronate 4-epimerase 1;(source:Araport11) |
TAIR Curator Summary: |
Encodes a UDP-D-glucuronate 4-epimerase involved in pectin biosynthesis in the cell wall and affects cell wall integrity and immunity to fungi and bacteria. |
TAIR Short Description: |
UDP-D-glucuronate 4-epimerase 1 |
TAIR Aliases: |
GAE1 |
|
•
•
•
•
•
|
Gene |
Length: |
1258
|
Chromosome Location: |
Chr5: 17961019-17962276 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
TAIR Curator Summary: |
Secreted peptide which functions in plant growth and pathogen defense. SCOOP (SERINE RICH ENDOGENOUS PEPTIDE) family member, involved in immunity against herbivorous insects. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
PROSCOOP4, STMP10 |
|
•
•
•
•
•
|
GO Term |
Description: |
Any process that modulates the frequency, rate or extent of innate immunity memory response. |
|
•
•
•
•
•
|
Protein Domain |
|
•
•
•
•
•
|
Gene |
Length: |
2097
|
Chromosome Location: |
Chr2: 14629986-14632082 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Glycolipid transfer protein (GLTP) family protein;(source:Araport11) |
TAIR Curator Summary: |
Gene product transports the glycolipid precursor sphingosine between membranes in vitro. Mutant constitutively expresses defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
Glycolipid transfer protein (GLTP) family protein |
TAIR Aliases: |
ACD11 |
|
•
•
•
•
•
|
Protein |
Organism . Name: |
Arabidopsis thaliana |
Length: |
1168
|
|
•
•
•
•
•
|
Protein |
Organism . Name: |
Arabidopsis thaliana |
Length: |
417
|
|
•
•
•
•
•
|
Protein |
Organism . Name: |
Arabidopsis thaliana |
Length: |
406
|
|
•
•
•
•
•
|
Gene |
Length: |
1618
|
Chromosome Location: |
Chr1: 9205800-9207417 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein;(source:Araport11) |
TAIR Curator Summary: |
Eukaryotic translation initiation factor 5A-2. Involved in programmed cell death triggered as a response to pseudomonas syringae infection. Loss of function mutants are more resistant to infection. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
Eukaryotic translation initiation factor 5A-1 (eIF-5A 1) protein |
TAIR Aliases: |
ATELF5A-2, ELF5A-2, FBR12 |
|
•
•
•
•
•
|
Gene |
Length: |
3965
|
Chromosome Location: |
Chr1: 27484240-27488204 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
PEP1 receptor 1;(source:Araport11) |
TAIR Curator Summary: |
Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
PEP1 receptor 1 |
TAIR Aliases: |
ATPEPR1, PEPR1 |
|
•
•
•
•
•
|
Gene |
Length: |
2120
|
Chromosome Location: |
Chr5: 16089678-16091797 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Nodulin MtN3 family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes RPG1 (RUPTURED POLLEN GRAIN1), a member of the MtN3/saliva gene family. Crucial for exine pattern formation and cell integrity of microspores. |
TAIR Short Description: |
Nodulin MtN3 family protein |
TAIR Aliases: |
AtSWEET8, RPG1, SWEET8 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
DSC1 and DSC2 are responsible for autoimmunity in Arabidopsis camta3 mutants. Immunity triggered by DSC1 or DSC2 in tobacco is suppressed by CAMTA3 co-expression.[DSC1] |
Organism: |
A. thaliana |
Gene: |
AT4G12010 |
PubMed Id: |
28407487 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
DSC1 and DSC2 are responsible for autoimmunity in Arabidopsis camta3 mutants. Immunity triggered by DSC1 or DSC2 in tobacco is suppressed by CAMTA3 co-expression.[DSC2] |
Organism: |
A. thaliana |
Gene: |
AT5G18370 |
PubMed Id: |
28407487 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
FLS2 complexes regulate the expression of AtCLCd, further supporting a role for AtCLCd in pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI). |
Organism: |
A. thaliana |
Gene: |
FLS2 |
PubMed Id: |
24449384 |
|
•
•
•
•
•
|
Gene |
Length: |
1925
|
Chromosome Location: |
Chr2: 12879663-12881587 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Protein phosphatase 2C family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a chloroplast PP2C phosphatase that is required for efficient dephosphorylation of PSII proteins and involved in light acclimation.Loss of function enhances immunity to bacterial pathogens. |
TAIR Short Description: |
Protein phosphatase 2C family protein |
TAIR Aliases: |
AtPP2C26, PBCP |
|
•
•
•
•
•
|
Gene |
Length: |
3864
|
Chromosome Location: |
Chr5: 91838-95701 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a tRNA methyltransferase that mediates the 2'-O-ribose methylation of selected tRNA species in the anticodon loop. Mutation of this gene compromises plant immunity against bacteria. |
TAIR Short Description: |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
TAIR Aliases: |
AtTRM7a, SCS9, TRM7a |
|
•
•
•
•
•
|
Gene |
Length: |
1775
|
Chromosome Location: |
Chr5: 3638191-3639965 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Protein kinase superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Similar to receptor like kinase but does not appear to have kinase activity (psuedokinase). It is involved in HopZ1a effector triggered immunity. Interacts with ZAR1 and ZED1.Localization to membrane is dependent on N-terminal myristoylation domain |
TAIR Short Description: |
Protein kinase superfamily protein |
TAIR Aliases: |
BKN2, SZE2 |
|
•
•
•
•
•
|
Gene |
Length: |
2285
|
Chromosome Location: |
Chr5: 18950843-18953127 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Tetraspanin family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a transmembrane protein of the tetraspanin (TET) family, one of 17 members found in Arabidopsis. Double mutant analysis showed that TRN1 and TRN2 act in the same pathway. Required for the maintenance of both the radial pattern of tissue differentiation in the root and for the subsequent circumferential pattern within the epidermis. |
TAIR Short Description: |
Tetraspanin family protein |
TAIR Aliases: |
TET1, TRN2 |
|
•
•
•
•
•
|
Gene |
Length: |
3012
|
Chromosome Location: |
Chr4: 10304662-10307673 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Pentatricopeptide repeat (PPR) superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a pentatricopeptide (PPR) protein involved in leaf and root development. dot4 mutants have an aberrant midgap venation pattern in juvenile leaves and cotyledons. |
TAIR Short Description: |
Pentatricopeptide repeat (PPR) superfamily protein |
TAIR Aliases: |
DOT4 |
|
•
•
•
•
•
|
Gene |
Length: |
11102
|
Chromosome Location: |
Chr1: 20637333-20648434 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
RNA polymerase II transcription mediator;(source:Araport11) |
TAIR Curator Summary: |
Encodes the Arabidopsis homolog of the transcriptional regulator MED13, is dynamically expressed during embryogenesis and regulates both developmental timing and the radial pattern formation. |
TAIR Short Description: |
RNA polymerase II transcription mediators |
TAIR Aliases: |
GCT, MAB2, MED13 |
|
•
•
•
•
•
|
GO Term |
Description: |
Any process that activates or increases the frequency, rate or extent of innate immunity memory response. |
|
•
•
•
•
•
|
GO Term |
Description: |
The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism. |
|
•
•
•
•
•
|
Gene |
Length: |
2599
|
Chromosome Location: |
Chr3: 8603212-8605810 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
UDP-D-glucuronate 4-epimerase 6;(source:Araport11) |
TAIR Curator Summary: |
Encodes a UDP-D-glucuronate 4-epimerase involved in pectin biosynthesis in the cell wall and affects cell wall integrity and immunity to fungi and bacteria. The mRNA is cell-to-cell mobile. |
TAIR Short Description: |
UDP-D-glucuronate 4-epimerase 6 |
TAIR Aliases: |
GAE6 |
|
•
•
•
•
•
|
Gene |
Length: |
1698
|
Chromosome Location: |
Chr5: 5509625-5511322 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Inositol 1,3,4-trisphosphate 5/6-kinase family protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a inositol 1,3,4-trisphosphate 5/6-kinase. Catalyzes the phosphorylation of phytic acid (InsP6) to the symmetric InsP7 isomer 5-InsP7. Together with IPK1 modulate crosstalks between SA-dependent immunity and phosphate-starvation responses. |
TAIR Short Description: |
Inositol 1,3,4-trisphosphate 5/6-kinase family protein |
TAIR Aliases: |
AtITPK1, ITPK1 |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
apoptosis triggered by ER stress |
Type: |
synonym |
|
•
•
•
•
•
|
Gene |
Length: |
4946
|
Chromosome Location: |
Chr1: 26288228-26293173 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
alpha-amylase-like 3;(source:Araport11) |
TAIR Curator Summary: |
Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. |
TAIR Short Description: |
alpha-amylase-like 3 |
TAIR Aliases: |
AMY3, ATAMY3 |
|
•
•
•
•
•
|
GO Term |
Description: |
Any process that stops, prevents or reduces the frequency, rate or extent of innate immunity memory response. |
|
•
•
•
•
•
|
Gene |
Length: |
2230
|
Chromosome Location: |
Chr2: 10684118-10686347 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
stromal cell-derived factor 2-like protein precursor;(source:Araport11) |
TAIR Curator Summary: |
Encodes an endoplasmic reticulum protein SDF2 (stromal-derived factor-2). Forms a complex SDF2-ERdj3B-BiP that is required for the proper accumulation of the surface-exposed leucine-rich repeat receptor kinases EFR. EFR is involved in PAMP (pathogen associated molecular patterns) triggered immunity. |
TAIR Short Description: |
stromal cell-derived factor 2-like protein precursor |
TAIR Aliases: |
AtSDF2, ATSDL, SDF2 |
|
•
•
•
•
•
|
GeneRIF (Gene Reference into Function) |
Annotation: |
SERK3/BAK1 appears to integrate diverse perception events into downstream pathogen-associated molecular pattern responses, leading to immunity against a range of invading microbes. |
Organism: |
A. thaliana |
Gene: |
BAK1 |
PubMed Id: |
17626179 |
|
•
•
•
•
•
|
Gene |
Length: |
631
|
Chromosome Location: |
Chr2: 9903215-9903845 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
transmembrane protein;(source:Araport11) |
TAIR Curator Summary: |
Encoding a precursor protein of a secreted peptide that is responsive to flg22 stimulus. Finetuning role in modulation of immunity through the regulation of SA and JA biosynthesis and signalling pathways. |
TAIR Short Description: |
NULL |
TAIR Aliases: |
PIP3, prePIP3 |
|
•
•
•
•
•
|
Gene |
Length: |
2075
|
Chromosome Location: |
Chr2: 14226668-14228742 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
NAD(P)-binding Rossmann-fold superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a protein with homology to members of the dihydroflavonol-4-reductase (DFR) superfamily. Its expression pattern suggests that AtCRL2 is involved in the synthesis and/or maintenance of vascular tissue. |
TAIR Short Description: |
NAD(P)-binding Rossmann-fold superfamily protein |
TAIR Aliases: |
AtCRL2, CRL2 |
|
•
•
•
•
•
|
GO Term |
Description: |
Any developmental process that results in the creation of defined areas or spaces within the mesonephros to which cells respond and eventually are instructed to differentiate. |
|
•
•
•
•
•
|
Gene |
Length: |
1326
|
Chromosome Location: |
Chr3: 21393963-21395288 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
Protein kinase superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes a pseudokinase that likely acts as a decoy to lure the P. syringae effector acetyltransferase HopZ1a to the ZAR1-resistance complex, resulting in effector-triggered immunity (ETI) activation. It is acetylated by HopZ1a. |
TAIR Short Description: |
Protein kinase superfamily protein |
TAIR Aliases: |
ZED1 |
|
•
•
•
•
•
|
GO Term |
Description: |
Any process involved in the carrying out of an immune response by a T cell. |
|
•
•
•
•
•
|
Gene |
Length: |
1957
|
Chromosome Location: |
Chr5: 20745349-20747305 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
crumpled leaf;(source:Araport11) |
TAIR Curator Summary: |
Encodes CRL (CRUMPLED LEAF), a protein localized in the outer envelope membrane of plastids. Mutation in this gene affects the pattern of cell division, cell differentiation and plastid division. |
TAIR Short Description: |
crumpled leaf |
TAIR Aliases: |
CAA33, CRL |
|
•
•
•
•
•
|
Gene |
Length: |
2894
|
Chromosome Location: |
Chr5: 17772856-17775749 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
C2H2-like zinc finger protein;(source:Araport11) |
TAIR Curator Summary: |
NUC is a member of the BIRD group of transcriptional regulators and is required for the formative divisions that pattern the root. the ground tissue into cortex and endodermis. |
TAIR Short Description: |
C2H2-like zinc finger protein |
TAIR Aliases: |
AtIDD8, IDD8, NUC |
|
•
•
•
•
•
|
Gene |
Length: |
4412
|
Chromosome Location: |
Chr3: 5908934-5913345 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein;(source:Araport11) |
TAIR Curator Summary: |
Encodes DRM3 (Domains Rearranged Methyltransferase3), a catalytically mutated paralog of the cytosine methyltransferase DRM2. Despite being catalytically mutated, DRM3 is required for normal maintenance of non-CG DNA methylation, establishment of RNA-directed DNA methylation triggered by repeat sequences and accumulation of repeat-associated small RNAs. |
TAIR Short Description: |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
TAIR Aliases: |
AtDRM3, DRM3 |
|
•
•
•
•
•
|
Ontology Term Synonym |
|
•
•
•
•
•
|
Ontology Term |
Description: |
Protein involved in adaptive immunity. Vertebrates can develop a broad and almost infinite repertoire of antigen-specific receptors, which allows vertebrates to recognize almost any potential pathogen or toxin and to mount antigen-specific responses to it. Two types of adaptive immunity systems have evolved in vertebrates in order to generate immune receptor diversity. The jawed vertebrates strategy uses the V(D)JC recombination to achieve combinatorial diversity of immunoglobulin-based B cell receptors and T cell receptors. The jawless vertebrate strategy uses the somatic rearrangements of variable leucine-rich cassettes in the variable lymphocyte receptors (VLRs). The hallmarks of an adaptive immune system is the production of antigen-specific recognition receptor by somatic gene rearrangement. The long life of some antigen-primed cytotoxic lymphocytes and plasma cells provide protective memory to prevent reinvasion |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
effector-triggered immunity |
Type: |
synonym |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
cell-mediated immunity |
Type: |
synonym |
|
•
•
•
•
•
|
Ontology Term Synonym |
Name: |
innate immunity |
Type: |
synonym |
|
•
•
•
•
•
|
Gene |
Length: |
4098
|
Chromosome Location: |
Chr1: 19987117-19991214 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
mitogen-activated protein kinase kinase kinase 3;(source:Araport11) |
TAIR Curator Summary: |
Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK5 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens. |
TAIR Short Description: |
mitogen-activated protein kinase kinase kinase 3 |
TAIR Aliases: |
MAP3KA, MAPKKK3 |
|
•
•
•
•
•
|
Gene |
Length: |
3859
|
Chromosome Location: |
Chr5: 26695568-26699426 |
Organism . Short Name: |
A. thaliana |
TAIR Computational Description: |
mitogen-activated protein kinase kinase kinase 5;(source:Araport11) |
TAIR Curator Summary: |
Encodes a member of the MEKK subfamily that functions redundantly with MAPKKK3 to activate MPK3/6 downstream of multiple pattern recognition receptors and confer resistance to both bacterial and fungal pathogens. |
TAIR Short Description: |
mitogen-activated protein kinase kinase kinase 5 |
TAIR Aliases: |
MAPKKK5 |
|
•
•
•
•
•
|
Publication |
First Author: |
Zlotnik A |
Title: |
Chemokines: a new classification system and their role in immunity. |
Year: |
2000 |
Journal: |
Immunity |
Volume: |
12 |
Pages: |
121-7 |
|
•
•
•
•
•
|
Publication |
First Author: |
Garlanda C |
Title: |
The interleukin-1 family: back to the future. |
Year: |
2013 |
Journal: |
Immunity |
Volume: |
39 |
Pages: |
1003-18 |
|
•
•
•
•
•
|
Publication |
First Author: |
de Saint-Vis B |
Title: |
A novel lysosome-associated membrane glycoprotein, DC-LAMP, induced upon DC maturation, is transiently expressed in MHC class II compartment. |
Year: |
1998 |
Journal: |
Immunity |
Volume: |
9 |
Pages: |
325-36 |
|
•
•
•
•
•
|
Publication |
First Author: |
Jin T |
Title: |
Structures of the HIN domain:DNA complexes reveal ligand binding and activation mechanisms of the AIM2 inflammasome and IFI16 receptor. |
Year: |
2012 |
Journal: |
Immunity |
Volume: |
36 |
Pages: |
561-71 |
|
•
•
•
•
•
|
Publication |
First Author: |
Maltbaek JH |
Title: |
ABCC1 transporter exports the immunostimulatory cyclic dinucleotide cGAMP. |
Year: |
2022 |
Journal: |
Immunity |
Volume: |
55 |
Pages: |
1799-1812.e4 |
|
•
•
•
•
•
|
Publication |
First Author: |
Le LQ |
Title: |
Mice lacking the orphan G protein-coupled receptor G2A develop a late-onset autoimmune syndrome. |
Year: |
2001 |
Journal: |
Immunity |
Volume: |
14 |
Pages: |
561-71 |
|
•
•
•
•
•
|
Publication |
First Author: |
Yoon DW |
Title: |
Tap: a novel cellular protein that interacts with tip of herpesvirus saimiri and induces lymphocyte aggregation. |
Year: |
1997 |
Journal: |
Immunity |
Volume: |
6 |
Pages: |
571-82 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dong G |
Title: |
Insights into MHC class I peptide loading from the structure of the tapasin-ERp57 thiol oxidoreductase heterodimer. |
Year: |
2009 |
Journal: |
Immunity |
Volume: |
30 |
Pages: |
21-32 |
|
•
•
•
•
•
|
Publication |
First Author: |
Wiley SR |
Title: |
Identification and characterization of a new member of the TNF family that induces apoptosis. |
Year: |
1995 |
Journal: |
Immunity |
Volume: |
3 |
Pages: |
673-82 |
|
•
•
•
•
•
|
Publication |
First Author: |
Lenz LL |
Title: |
Identification of an H2-M3-restricted Listeria epitope: implications for antigen presentation by M3. |
Year: |
1996 |
Journal: |
Immunity |
Volume: |
5 |
Pages: |
63-72 |
|
•
•
•
•
•
|
Publication |
First Author: |
Oftedal BE |
Title: |
Dominant Mutations in the Autoimmune Regulator AIRE Are Associated with Common Organ-Specific Autoimmune Diseases. |
Year: |
2015 |
Journal: |
Immunity |
Volume: |
42 |
Pages: |
1185-96 |
|
•
•
•
•
•
|
Publication |
First Author: |
Dorner BG |
Title: |
Selective expression of the chemokine receptor XCR1 on cross-presenting dendritic cells determines cooperation with CD8+ T cells. |
Year: |
2009 |
Journal: |
Immunity |
Volume: |
31 |
Pages: |
823-33 |
|
•
•
•
•
•
|
Publication |
First Author: |
Pajerowski AG |
Title: |
NKAP is a transcriptional repressor of notch signaling and is required for T cell development. |
Year: |
2009 |
Journal: |
Immunity |
Volume: |
30 |
Pages: |
696-707 |
|
•
•
•
•
•
|
Publication |
First Author: |
Kolls JK |
Title: |
Interleukin-17 family members and inflammation. |
Year: |
2004 |
Journal: |
Immunity |
Volume: |
21 |
Pages: |
467-76 |
|
•
•
•
•
•
|
Publication |
First Author: |
Oppmann B |
Title: |
Novel p19 protein engages IL-12p40 to form a cytokine, IL-23, with biological activities similar as well as distinct from IL-12. |
Year: |
2000 |
Journal: |
Immunity |
Volume: |
13 |
Pages: |
715-25 |
|
•
•
•
•
•
|