To the BAR Homepage The Bio-Analytic Resource Promomer


Welcome to Promomer! Promomer is a tool for exploring and identifying potential cis-elements within the promoters of your gene or genes of interest. Click here for instructions in a new window

Please select the data set you'd like to search in, choose one of the following four options, input the required info, and click on Submit:

TAIR10_upstream_1000 TAIR10_upstream_500
TAIR10_downstream_1000 TAIR10_downstream_500       (TAIR7 sets are here; see TAIR for more info)

1. Identify a statistically over-represented element in your gene of interest
← Enter the AGI ID of your gene of interest.
← Enter the # of base pairs in the element.
← Enter the minimum # of occurrences of the element in your gene.





 
2. Identify a statistically over-represented element in a group of genes
Enter the AGI IDs of your genes of interest, each on a new line

← Enter the # of base pairs in the element.
← Enter the minimum percentage of genes in which the identified element should occur.












 
3. Identify genes in the genome that contain my element of interest
← Enter the element (2-10 bp). Wobbles in any position are allowed.
Please indicate the wobble using any of the following standard IUPAC wobble codes:
M  A or C
R  A or G
W A or T
S  C or G
Y  C or T
K  G or T
     V A or C or G
H A or C or T
D A or G or T
B C or G or T
     X A or C or G or T

 
4. Identify your element of interest in a group of genes
Enter the AGI IDs of your genes of interest, each on a new line

← Enter the element (2-10 bp). Wobbles in any position are allowed.
Please indicate the wobble using any of the following standard IUPAC wobble codes:
M  A or C
R  A or G
W A or T
S  C or G
Y  C or T
K  G or T
     V A or C or G
H A or C or T
D A or G or T
B C or G or T
     X A or C or G or T