Promomer
Welcome to Promomer! Promomer is a tool for exploring and identifying potential cis-elements within the promoters of your gene or genes of interest.
Please select the data set you'd like to search in, choose one of the following four options, input the required info, and click on Submit:
TAIR10_upstream_1000
TAIR10_upstream_500
TAIR10_downstream_1000
TAIR10_downstream_500 (TAIR7 sets are
here
; see
TAIR
for more info)
1. Identify a statistically over-represented element in your gene of interest
← Enter the AGI ID of your gene of interest.
4
5
6
7
8
9
10
← Enter the # of base pairs in the element.
3
4
5
6
7
8
9
10
← Enter the minimum # of occurrences of the element in your gene.
2. Identify a statistically over-represented element in a group of genes
Enter the AGI IDs of your genes of interest, each on a new line
4
5
6
7
8
9
10
← Enter the # of base pairs in the element.
50
55
60
65
70
75
80
85
90
95
100
← Enter the minimum percentage of genes in which the identified element should occur.
3. Identify genes in the genome that contain my element of interest
← Enter the element (2-10 bp). Wobbles in any position are allowed.
Please indicate the wobble using any of the following standard IUPAC wobble codes:
M
A or C
R
A or G
W
A or T
S
C or G
Y
C or T
K
G or T
V
A or C or G
H
A or C or T
D
A or G or T
B
C or G or T
X
A or C or G or T
4. Identify your element of interest in a group of genes
Enter the AGI IDs of your genes of interest, each on a new line
← Enter the element (2-10 bp). Wobbles in any position are allowed.
Please indicate the wobble using any of the following standard IUPAC wobble codes:
M
A or C
R
A or G
W
A or T
S
C or G
Y
C or T
K
G or T
V
A or C or G
H
A or C or T
D
A or G or T
B
C or G or T
X
A or C or G or T