NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Title:Transcriptomic analysis of inducible RNAi transgenic plants
Description:The objective of this experiment is to proof the concept of tetrapyrrole-mediated signaling by analysis of the primary response on nuclear transcription by using an inducible transgene expression system. Transgenic plants with chemical induced silencing (RNAi) of genes encoding enzymes of the Mg branch (chlH, chlM, chl27) will allow us to explore time-resolved early variations of nuclear gene expression upon induced changes of activities of these specific steps in the chlorophyll-synthesizing branch of tetrapyrrole biosynthesis.For transcriptome analysis we used green tissue of three weeks old arabidopsis seedlings treated with dexamethasone for 24 h. The seedlings were grown in little pots on soil under the same conditions.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
Salinas-Hartwig_622-1_Col-0_Rep1_ATH17780685 Salinas-Hartwig_622-1_Col-0_Rep1_ATH1.CEL
Salinas-Hartwig_622-2_Col-0_Rep2_ATH17780684 Salinas-Hartwig_622-2_Col-0_Rep2_ATH1.CEL
Salinas-Hartwig_622-3_ChlH-RNAi_Rep1_ATH17780683 Salinas-Hartwig_622-3_ChlH-RNAi_Rep1_ATH1.CEL
Salinas-Hartwig_622-4_ChlH-RNAi_Rep2_ATH17780682 Salinas-Hartwig_622-4_ChlH-RNAi_Rep2_ATH1.CEL
Salinas-Hartwig_622-5_ChlM-RNAi _Rep1_ATH17780681 Salinas-Hartwig_622-5_ChlM-RNAi _Rep1_ATH1.CEL
Salinas-Hartwig_622-6_ChlM-RNAi _Rep2_ATH17780680 Salinas-Hartwig_622-6_ChlM-RNAi _Rep2_ATH1.CEL
Salinas-Hartwig_622-7_Chl27-RNAi_Rep1_ATH17780679 Salinas-Hartwig_622-7_Chl27-RNAi_Rep1_ATH1.CEL
Salinas-Hartwig_622-8_Chl27-RNAi_Rep2_ATH17780678 Salinas-Hartwig_622-8_Chl27-RNAi_Rep2_ATH1.CEL