NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:590
Title:P G62 study
Date:2012-05-16
Description:Analysis of root transcriptome of wild type (Col-0) and mutant (pen1-3) Arabidopsis plants after seed inoculation with the growth promoting rhizobacterium Pseudomonas sp. G62.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
Schwochow_590-10_pen1-3_Bacteria_Root_Rep1_ATH17780386Col-3roots Schwochow_590-10_pen1-3_Bacteria_Root_Rep1_ATH1.CEL
Treatment: - measure OD (around 0,6) - take 2ml ?³ centrifuge for 1 minute at 12000rpm - discard supernatant - wash pellet with 10mM MgSO4 ?³ centrifuge for 1minute at 12000rpm - discard supernatant - resolve the bacteria pellet in 2ml 10mM MgSO4 - discard tap water from the seeds - bacteria solution to the seeds - incubate for 3 hours - shake slightly every 30 minutes
Schwochow_590-11_pen1-3_Bacteria_Root_Rep1_ATH17780387Col-3roots Schwochow_590-11_pen1-3_Bacteria_Root_Rep1_ATH1.CEL
Treatment: - measure OD (around 0,6) - take 2ml ?³ centrifuge for 1 minute at 12000rpm - discard supernatant - wash pellet with 10mM MgSO4 ?³ centrifuge for 1minute at 12000rpm - discard supernatant - resolve the bacteria pellet in 2ml 10mM MgSO4 - discard tap water from the seeds - bacteria solution to the seeds - incubate for 3 hours - shake slightly every 30 minutes
Schwochow_590-12_pen1-3_Bacteria_Root_Rep2_ATH17780388Col-3roots Schwochow_590-12_pen1-3_Bacteria_Root_Rep2_ATH1.CEL
Treatment: - measure OD (around 0,6) - take 2ml ?³ centrifuge for 1 minute at 12000rpm - discard supernatant - wash pellet with 10mM MgSO4 ?³ centrifuge for 1minute at 12000rpm - discard supernatant - resolve the bacteria pellet in 2ml 10mM MgSO4 - discard tap water from the seeds - bacteria solution to the seeds - incubate for 3 hours - shake slightly every 30 minutes
Schwochow_590-1_Col-0_Control_Root_Rep1_ATH17780377roots N1092Schwochow_590-1_Col-0_Control_Root_Rep1_ATH1.CEL
Schwochow_590-2_Col-0_Control_Root_Rep2_ATH17780378roots N1092Schwochow_590-2_Col-0_Control_Root_Rep2_ATH1.CEL
Schwochow_590-3_Col-0_Control_Root_Rep3_ATH17780379roots N1092Schwochow_590-3_Col-0_Control_Root_Rep3_ATH1.CEL
Schwochow_590-4_Col-0_Bacteria_Root_Rep1_ATH17780380roots N1092Schwochow_590-4_Col-0_Bacteria_Root_Rep1_ATH1.CEL
Schwochow_590-5_Col-0_Bacteria_Root_Rep2_ATH17780381roots N1092Schwochow_590-5_Col-0_Bacteria_Root_Rep2_ATH1.CEL
Treatment: - measure OD (around 0,6) - take 2ml ?³ centrifuge for 1 minute at 12000rpm - discard supernatant - wash pellet with 10mM MgSO4 ?³ centrifuge for 1minute at 12000rpm - discard supernatant - resolve the bacteria pellet in 2ml 10mM MgSO4 - discard tap water from the seeds - bacteria solution to the seeds - incubate for 3 hours - shake slightly every 30 minutes
Schwochow_590-6_Col-0_Bacteria_Root_Rep3_ATH17780382roots N1092Schwochow_590-6_Col-0_Bacteria_Root_Rep3_ATH1.CEL
Treatment: - measure OD (around 0,6) - take 2ml ?³ centrifuge for 1 minute at 12000rpm - discard supernatant - wash pellet with 10mM MgSO4 ?³ centrifuge for 1minute at 12000rpm - discard supernatant - resolve the bacteria pellet in 2ml 10mM MgSO4 - discard tap water from the seeds - bacteria solution to the seeds - incubate for 3 hours - shake slightly every 30 minutes
Schwochow_590-7_pen1-3_Control_Root_Rep1_ATH17780383Col-3roots Schwochow_590-7_pen1-3_Control_Root_Rep1_ATH1.CEL
Schwochow_590-8_pen1-3_Control_Root_Rep2_ATH17780384Col-3roots Schwochow_590-8_pen1-3_Control_Root_Rep2_ATH1.CEL
Schwochow_590-9_pen1-3_Control_Root_Rep3_ATH17780385Col-3roots Schwochow_590-9_pen1-3_Control_Root_Rep3_ATH1.CEL