NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:	582
Title:	Xylella fastidiosa infection of Arabidopsis thaliana Tsu-1
Date:	2011-02-14
Description:	The experiment compares Xylella fastidiosa (GFP labeled Temecula) inoculated Arabidopsis with mock inoculated tissue. Bacterial were mechanically inoculated into midrib of leaves. At 9dpi, midribs above the inoculation point were dissected out and frozen. Total RNA was isolated using Trizol, and hybridized to Affy ATH-1 arrays. Three biological replicate pairs of Xf and mock inoculated RNA were run.
ftp Link:	ftp Link

Slide Information:

Slide ID	Slide Name	Tissue	Stock Code	Cel File
Rogers_mock-inoculated 1_SLD	7780305	leaf midrib	CS22641	EER005-ATH1-121501.CEL
Rogers_mock-inoculated 1_SLD	Treatment: plants were 4-4.5 weeks old at inoculation. mock inoculation - 1 ul drop of water on midrib at leaf-petiole junction and poked 4-5 times under drop with very small pin. harvest 9 dpi
Rogers_mock-inoculated 2_SLD	7780306	leaf midrib	CS22641	EER009-ATH1-121501.CEL
Rogers_mock-inoculated 2_SLD	Treatment: plants were 4-4.5 weeks old at inoculation. mock inoculation - 1 ul drop of water on midrib at leaf-petiole junction and poked 4-5 times under drop with very small pin. harvest 9 dpi
Rogers_mock-inoculated 3_SLD	7780307	leaf midrib	CS22641	EER013-ATH1-121501.CEL
Rogers_mock-inoculated 3_SLD	Treatment: plants were 4-4.5 weeks old at inoculation. mock inoculation - 1 ul drop of water on midrib at leaf-petiole junction and poked 4-5 times under drop with very small pin. harvest 9 dpi
Rogers_Xylella-fastidiosa inoculated 1_SLD	7780308	leaf midrib from inoculated leaf	CS22641	EER006-ATH1-121501.CEL
Rogers_Xylella-fastidiosa inoculated 1_SLD	Treatment: plants were 4-4.5 weeks old at inoculation. Xylella fastidiosa (GFP Temecula from Steve Lindow) inoculation - 1 ul drop of bacteria OD600 = 0.2 in water on midrib at leaf-petiole junction and poked 4-5 times under drop with very small pin. harvest 9 dpi
Rogers_Xylella-fastidiosa inoculated 2_SLD	7780309	leaf midrib from inoculated leaf	CS22641	EER010-ATH1-121501.CEL
Rogers_Xylella-fastidiosa inoculated 2_SLD	Treatment: plants were 4-4.5 weeks old at inoculation. Xylella fastidiosa (GFP Temecula from Steve Lindow) inoculation - 1 ul drop of bacteria OD600 = 0.2 in water on midrib at leaf-petiole junction and poked 4-5 times under drop with very small pin. harvest 9 dpi
Rogers_Xylella-fastidiosa inoculated 3_SLD	7780310	leaf midrib from inoculated leaf	CS22641	EER014-ATH1-121501.CEL
Rogers_Xylella-fastidiosa inoculated 3_SLD	Treatment: plants were 4-4.5 weeks old at inoculation. Xylella fastidiosa (GFP Temecula from Steve Lindow) inoculation - 1 ul drop of bacteria OD600 = 0.2 in water on midrib at leaf-petiole junction and poked 4-5 times under drop with very small pin. harvest 9 dpi