NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Title:Transcript profiling of PPDK and PCK mutant seedlings
Description:This experiment aims to assess effects on transcriptional profiles of knocking out genes encoding two enzymes of C4 photosynthesis, PPDK (At4g15530) and PCK (At4g37870), both individually and in combination in Arabidopsis seedlings. This is to be achieved using T-DNA insert lines N616158 and N532133 and a double mutant created by a cross between these two lines. Each will be compared to the wild type Col-0. Tissue has been collected from seedlings which have been grown in the dark at 24oC for two days after a 30 min light pulse. Three biological replicates have been used for both Col-0 and each line.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
Astley_534-10_PPDK-PCK-mutant_Rep1_ATH17779512Col-0whole plant Astley_534-10_PPDK-PCK-mutant_Rep1_ATH1.CEL
Astley_534-11_PPDK-PCK-mutant_Rep2_ATH17779513Col-0whole plant Astley_534-11_PPDK-PCK-mutant_Rep2_ATH1.CEL
Astley_534-12_PPDK-PCK-mutant_Rep3_ATH17779514Col-0whole plant Astley_534-12_PPDK-PCK-mutant_Rep3_ATH1.CEL
Astley_534-1_Col-0_Rep1 _ATH17779506whole plant N1092Astley_534-1_Col-0_Rep1 _ATH1.CEL
Astley_534-2_ Col-0_Rep2_ATH17779505whole plant N1092Astley_534-2_ Col-0_Rep2_ATH1.CEL
Astley_534-3_Col-0_Rep3_ATH17779504whole plant N1092Astley_534-3_Col-0_Rep3_ATH1.CEL
Astley_534-4_PPDK-mutant_Rep1_ATH17779503Col-0 (Columbia, N60000)whole plant N616158Astley_534-4_PPDK-mutant_Rep1_ATH1.CEL
Astley_534-5_PPDK-mutant_Rep2_ATH17779511Col-0 (Columbia, N60000)whole plant N616158Astley_534-5_PPDK-mutant_Rep2_ATH1.CEL
Astley_534-6_PPDK-mutant_Rep3_ATH17779510Col-0 (Columbia, N60000)whole plant N616158Astley_534-6_PPDK-mutant_Rep3_ATH1.CEL
Astley_534-7_PCK-mutant_Rep1_ATH17779509Col-0 (Columbia, N60000)whole plant N532133Astley_534-7_PCK-mutant_Rep1_ATH1.CEL
Astley_534-8_PCK-mutant_Rep2_ATH17779508Col-0 (Columbia, N60000)whole plant N532133Astley_534-8_PCK-mutant_Rep2_ATH1_2.CEL
Astley_534-9_PCK-mutant_Rep3_ATH17779507Col-0 (Columbia, N60000)whole plant N532133Astley_534-9_PCK-mutant_Rep3_ATH1.CEL