NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Title:Arabidopsis thaliana/Phytophthora parasitica compatible interaction transcriptome
Description:Oomycetes from the genus Phytophthora are fungus-like plant pathogens that are devastating for agriculture and natural ecosystems. Due to particular physiological characteristics, no treatments against diseases caused by oomycetes are presently available. To develop such treatments, it appears essential to dissect the molecular mechanisms that determine the interaction between Phytophthora species and host plants. The present project is focused on the molecular mechanisms that underlie the compatible plant-oomycete interaction and plant disease.The laboratory developed a novel interaction system involving the model plant, Arabidopsis thaliana and Phytophthora parasitica, a soil-borne pathogen infecting a wide host range, thus representing the majority of Phytophthora species. A characteristic feature of the compatible Arabidopsis/P. parasitica interaction is an extended biotrophic phase, before infection becomes necrotrophic. Because the initial biotrophic phase is extremely short on natural (e.g. solanaceous) hosts, the Arabidopsis system provides the opportunity to analyze, for both interaction partners, the molecular events that determine the initiation of infection and the switch to necrotrophy.The present project aims at analyzing the compatible interaction between A. thaliana roots and P. parasitica. The Affymetrix A. thaliana full genome chip will be used to characterize modulations of the transcriptome occurring over a period of 24h from the onset of plant root infection to the beginning of necrotrophy. Parallel to this study, a custom designed P. parasitica biochip will enable analyzing of P. parasitica gene expression during the same stages.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
Attard_1-10_At-Pp-30-hai_Rep2_ATH121644Col-0 (Columbia)roots CS60000Attard_1-10_At-Pp-30-hai_Rep2_ATH1.CEL
Attard_1-1_At-Control_Rep1_ATH121635Col-0 (Columbia)roots CS60000Attard_1-1_At-Control_Rep1_ATH1.CEL
Attard_1-2_At-Control_Rep2_ATH121636Col-0 (Columbia)roots CS60000Attard_1-2_At-Control_Rep2_ATH1.CEL
Attard_1-3_At-Pp-2.5-hai_Rep1_ATH121637Col-0 (Columbia)roots CS60000Attard_1-3_At-Pp-2.5-hai_Rep1_ATH1.CEL
Attard_1-4_At-Pp-2.5-hai_Rep2_ATH121638Col-0 (Columbia)roots CS60000Attard_1-4_At-Pp-2.5-hai_Rep2_ATH1.CEL
Attard_1-5_At-Pp-6-hai_Rep1_ATH121639Col-0 (Columbia)roots CS60000Attard_1-5_At-Pp-6-hai_Rep1_ATH1.CEL
Attard_1-6_At-Pp-6-hai_Rep2_ATH121640Col-0 (Columbia)roots CS60000Attard_1-6_At-Pp-6-hai_Rep2_ATH1.CEL
Attard_1-7_At-Pp-10.5-hai_Rep1_ATH121641Col-0 (Columbia)roots CS60000Attard_1-7_At-Pp-10.5-hai_Rep1_ATH1.CEL
Attard_1-8_At-Pp-10.5-hai_Rep2_ATH121642Col-0 (Columbia)roots CS60000Attard_1-8_At-Pp-10.5-hai_Rep2_ATH1.CEL
Attard_1-9_At-Pp-30-hai_Rep1_ATH121643Col-0 (Columbia)roots CS60000Attard_1-9_At-Pp-30-hai_Rep1_ATH1.CEL