NASCArrays Information at The BAR
NASCArrays Information at The BAR
Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed
from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the
experiment number. To download the CEL files, please click on the ftp link.
| Experiment: | 430 |
| Title: | Identifying Y candidate genes |
| Date: | 2009-11-11 |
| Description: | The circadian clock generates biological rhythms with a period of approximately 24 hours. Using microarray experiments, we have previously shown that approximately 16% of the Arabidopsis genome is regulated in a circadian manner (Edwards et al., 2006). Previous work from our lab in modelling the molecular oscillator of Arabidopsis introduced a hypothetical component Y into an evening loop of the clock gene network (Locke et al., 2005). GIGANTEA (GI) was suggested as a strong candidate for Y based on genetic evidence and its close matching of the expression profile predicted by the mathematical modelling. Recent experimental evidence suggests that GI may only partially account for the function of Y. Thus, we are undertaking a genomics approach to identify other candidate genes that match the predicted expression profile of Y. Samples were taken from wild type and lhy cca1 double mutant seedlings from 4 timepoints around the night to day transition (-15mins, +15mins, +30mins and +60mins) after 9 days of growth in 18:6 light dark cycles. We aim to identify genes showing the light induction response predicted for Y around dawn. |
| ftp Link: | ftp Link |
| Slide ID | Slide Name | Genetic Background | Tissue | Stock Code | Cel File |
|---|---|---|---|---|---|
| Edwards_4-10_cca1-lhy15m_Rep1_ATH1 | 21094 | Wassilewskija | whole seedlings | Edwards_4-10_cca1-lhy15m_Rep1_ATH1.CEL | |
| Edwards_4-11_cca1-lhy30m_Rep1_ATH1 | 21095 | Wassilewskija | whole seedlings | Edwards_4-11_cca1-lhy30m_Rep1_ATH1.CEL | |
| Edwards_4-12_cca1-lhy60m_Rep1_ATH1 | 21096 | Wassilewskija | whole seedlings | Edwards_4-12_cca1-lhy60m_Rep1_ATH1_2.CEL | |
| Edwards_4-13_cca1-lhy-15m_Rep2_ATH1 | 21097 | Wassilewskija | whole seedlings | Edwards_4-13_cca1-lhy-15m_Rep2_ATH1_2.CEL | |
| Edwards_4-14_cca1-lhy15m_Rep2_ATH1 | 21098 | Wassilewskija | whole seedlings | Edwards_4-14_cca1-lhy15m_Rep2_ATH1_2.CEL | |
| Edwards_4-15_cca1-lhy30m_Rep2_ATH1 | 21099 | Wassilewskija | whole seedlings | Edwards_4-15_cca1-lhy30m_Rep2_ATH1.CEL | |
| Edwards_4-16_cca1-lhy60m_Rep2_ATH1 | 21100 | Wassilewskija | whole seedlings | Edwards_4-16_cca1-lhy60m_Rep2_ATH1.CEL | |
| Edwards_4-1_WS-15m_Rep1_ATH1 | 21085 | whole seedlings | N6891 | Edwards_4-1_WS-15m_Rep1_ATH1.CEL | |
| Edwards_4-2_WS15m_Rep1_ATH1 | 21086 | whole seedlings | N6891 | Edwards_4-2_WS15m_Rep1_ATH1.CEL | |
| Edwards_4-3_WS30m_Rep1_ATH1 | 21087 | whole seedlings | N6891 | Edwards_4-3_WS30m_Rep1_ATH1.CEL | |
| Edwards_4-4_WS60m_Rep1_ATH1 | 21088 | whole seedlings | N6891 | Edwards_4-4_WS60m_Rep1_ATH1.CEL | |
| Edwards_4-5_WS-15m_Rep2_ATH1 | 21089 | whole seedlings | N6891 | Edwards_4-5_WS-15m_Rep2_ATH1.CEL | |
| Edwards_4-6_WS15m_Rep2_ATH1 | 21090 | whole seedlings | N6891 | Edwards_4-6_WS15m_Rep2_ATH1.CEL | |
| Edwards_4-7_WS30m_Rep2_ATH1 | 21091 | whole seedlings | N6891 | Edwards_4-7_WS30m_Rep2_ATH1.CEL | |
| Edwards_4-8_WS60m_Rep2_ATH1 | 21092 | whole seedlings | N6891 | Edwards_4-8_WS60m_Rep2_ATH1.CEL | |
| Edwards_4-9_cca1-lhy-15m_Rep1_ATH1 | 21093 | Wassilewskija | whole seedlings | Edwards_4-9_cca1-lhy-15m_Rep1_ATH1.CEL |