NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Title:Transciptome differences between two vitamin C-deficient mutants and the wild type
Description:The Arabidopsis mutant vtc2 is vitamin C-deficient and high light sensitive ((Mller-Moul et al., 2002. Plant Physiol 128: 970-977; Mller-Moul© et al., 2003. Plant Physiol 133: 748-760). Even though the VTC2 gene has been cloned (Jander et al., 2002. Plant Physiol 129: 440-450), its function is still unclear. The goal of this experiment is to learn more about the function of the VTC2 gene by determining differences in the transcriptome of the wild type and the vtc2-1 mutant. In order to differentiate between VTC2 gene specific differences and vitamin C-induced differences, a second vitamin C-deficient mutant vtc1-1 (Conklin et al., 1996. PNAS 93: 9970-9974) is included in the experiment. The plants will be grown on agar plates in a growth chamber with a 16 hour light (about 40 µmol photons m²s¹)/8 hour dark regime at 20°C for 14 days to stage 1.04. Whole plants will be collected and total RNA will be isolated using the Qiagen Rneasy plant mini kit (Qiagen, Hilden, Germany).
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
Mueller-Moule_1-1_Col-0_Rep1_ATH120650Whole plant Mueller-Moule_1-1_Col-0_Rep1_ATH1.CEL
Mueller-Moule_1-2_Col-0_Rep2_ATH120651Whole plant Mueller-Moule_1-2_Col-0_Rep2_ATH1.CEL
Mueller-Moule_1-3_Col-0_Rep3_ATH120652Whole plant Mueller-Moule_1-3_Col-0_Rep3_ATH1.CEL
Mueller-Moule_1-4_vtc1_Rep1_ATH120653Whole plant N8326Mueller-Moule_1-4_vtc1_Rep1_ATH1.CEL
Mueller-Moule_1-5_vtc1_Rep2_ATH120654Whole plant N8326Mueller-Moule_1-5_vtc1_Rep2_ATH1.CEL
Mueller-Moule_1-6_vtc1_Rep3_ATH120655Whole plant N8326Mueller-Moule_1-6_vtc1_Rep3_ATH1.CEL
Mueller-Moule_1-7_vtc2_Rep1_ATH120656Col-0Whole plant Mueller-Moule_1-7_vtc2_Rep1_ATH1.CEL
Mueller-Moule_1-8_vtc2_Rep2_ATH120657Col-0Whole plant Mueller-Moule_1-8_vtc2_Rep2_ATH1.CEL
Mueller-Moule_1-9_vtc2_Rep3_ATH120658Col-0Whole plant Mueller-Moule_1-9_vtc2_Rep3_ATH1.CEL