NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:	383
Title:	Cold acclimation in the sfr3-1 mutant
Date:	2008-04-30
Description:	The sfr3-1 mutation causes freezing-sensitivity in Arabidopsis thaliana. The mutated gene has been identified by positional cloning and is currently being characterised. The mutant appears normal when grown in the warm (no phenotype has been identified associated with such growth). However, following cold acclimation and subsequent freezing mutant plants are severely damaged whilst wild type plants are not. This suggests that sfr3 is deficient in the cold acclimation process. Micro-array analysis will enable the identification of any transcriptional changes during the cold acclimation process. This information will then be used, together with information obtained by gene characterisation, in order to more fully understand the nature of the sfr3 mutation.
ftp Link:	ftp Link

Slide Information:

Slide ID	Slide Name	Genetic Background	Tissue	Stock Code	Cel File
Garton_1-1_sfr3-warm_Rep1_ATH1	4800	Col-0	aerial tissues		Garton_1-1_sfr3_warm_Rep1_ATH1.CEL
Garton_1-2_sfr3-cold_Rep1_ATH1	4801	Col-0	aerial tissues		Garton_1-2_sfr3_cold_Rep1_ATH1.CEL
Garton_1-2_sfr3-cold_Rep1_ATH1	Treatment: Following 28 days growth in short day conditions at 20 degrees centigrade, the plants were transferred to 4 degrees centigrade for 10 days prior to sampling.
Garton_1-3_sfr3-warm_Rep2_ATH1	4823	Col-0	aerial tissues		Garton_1-3_sfr3-warm_Rep2_ATH1.CEL
Garton_1-4_sfr3-cold_Rep2_ATH1	4824	Col-0	aerial tissues		Garton_1-4_sfr3-cold_Rep2_ATH1.CEL
Garton_1-4_sfr3-cold_Rep2_ATH1	Treatment: Following 28 days growth in short day conditions at 20 degrees centigrade, the plants were transferred to 4 degrees centigrade for 10 days prior to sampling.
Garton_1-5_wildtype-warm_Rep1_ATH1	4825		aerial tissues	N1093	Garton_1-5_wildtype-warm_Rep1_ATH1.CEL
Garton_1-6_wildtype-cold_Rep1_ATH1	4826		aerial tissues	N1093	Garton_1-6_wildtype-cold_Rep1_ATH1.CEL
Garton_1-6_wildtype-cold_Rep1_ATH1	Treatment: Following 28 days growth in short day conditions at 20 degrees centigrade, the plants were transferred to 4 degrees centigrade for 10 days prior to sampling.
Garton_1-7_wildtype-warm_Rep2_ATH1	4827		aerial tissues	N1093	Garton_1-7_wildtype-warm_Rep2_ATH1.CEL
Garton_1-8_wildtype-cold_Rep2_ATH1	4828		aerial tissues	N1093	Garton_1-8_wildtype-cold_Rep2_ATH1.CEL
Garton_1-8_wildtype-cold_Rep2_ATH1	Treatment: Following 28 days growth in short day conditions at 20 degrees centigrade, the plants were transferred to 4 degrees centigrade for 10 days prior to sampling.