NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:367
Title:A gene expression map of the Arabidopsis root
Date:2006-02-28
Description:This experiment was donated by Philip N. Benfey's lab through ArexDB (http://www.arexdb.org).A global map of gene expression within an organ can identify genes with coordinated expression in localized domains, thereby relating gene activity to cell fate and tissue specialization. Here, we present localization of expression of more than 22,000 genes in the Arabidopsis root. Gene expression was mapped to 15 different zones of the root that correspond to cell types and tissues at progressive developmental stages. Patterns of gene expression traverse traditional anatomical boundaries and show cassettes of hormonal response. Chromosomal clustering defined some coregulated genes. This expression map correlates groups of genes to specific cell fates and should serve to guide reverse genetics.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
Birnbaum_1-10_StageII-3_Rep3_ATH14520ColumbiaWhere cells transition from being optically dense to a more transparent appearance as they begin longitudinal expansion (about 0.30 mm from the root tip) Birnbaum_1-10_StageII-3_Rep3_ATH1.CEL
Birnbaum_1-11_StageII-4_Rep4_ATH14521ColumbiaWhere cells transition from being optically dense to a more transparent appearance as they begin longitudinal expansion (about 0.30 mm from the root tip) Birnbaum_1-11_StageII-4_Rep4_ATH1.CEL
Birnbaum_1-12_StageIII-1_Rep1_ATH14522ColumbiaWhere root hairs are fully elongated (about 0.45 to 2 mm from the root tip) Birnbaum_1-12_StageIII-1_Rep1_ATH1.CEL
Birnbaum_1-13_StageIII-2_Rep2_ATH14523ColumbiaWhere root hairs are fully elongated (about 0.45 to 2 mm from the root tip) Birnbaum_1-13_StageIII-2_Rep2_ATH1.CEL
Birnbaum_1-14_StageIII-3_Rep3_ATH14524ColumbiaWhere root hairs are fully elongated (about 0.45 to 2 mm from the root tip) Birnbaum_1-14_StageIII-3_Rep3_ATH1.CEL
Birnbaum_1-15_StageIII-4_Rep4_ATH14525ColumbiaWhere root hairs are fully elongated (about 0.45 to 2 mm from the root tip) Birnbaum_1-15_StageIII-4_Rep4_ATH1.CEL
Birnbaum_1-16_wol-1_Rep1_ATH14526ColumbiaMarks cells in stele and starts to fade from the elongation zone Birnbaum_1-16_wol-1_Rep1_ATH1.CEL
Birnbaum_1-17_wol-2_Rep2_ATH14527ColumbiaMarks cells in stele and starts to fade from the elongation zone Birnbaum_1-17_wol-2_Rep2_ATH1.CEL
Birnbaum_1-18_wol-3_Rep3_ATH14528ColumbiaMarks cells in stele and starts to fade from the elongation zone Birnbaum_1-18_wol-3_Rep3_ATH1.CEL
Birnbaum_1-19_LRC-1_Rep1_ATH14573C24Lateral root cap plus epidermis Birnbaum_1-19_LRC-1_Rep1_ATH1.CEL
Birnbaum_1-1_src5-1_Rep1_ATH14511LandsbergMarks the QC and the endodermis at least past the mature hair zone Birnbaum_1-1_src5-1_Rep1_ATH1.CEL
Birnbaum_1-20_LRC-2_Rep2_ATH14574C24Lateral root cap plus epidermis Birnbaum_1-20_LRC-2_Rep2_ATH1.CEL
Birnbaum_1-21_LRC-3_Rep3_ATH14575C24Lateral root cap plus epidermis Birnbaum_1-21_LRC-3_Rep3_ATH1.CEL
Birnbaum_1-22_gl2-1_Rep1_ATH14776ColumbiaMarks atrichoblasts from the QC up. Birnbaum_1-22_gl2-1_Rep1_ATH1.CEL
Birnbaum_1-23_gl2-2_Rep2_ATH14777ColumbiaMarks atrichoblasts from the QC up. Birnbaum_1-23_gl2-2_Rep2_ATH1.CEL
Birnbaum_1-24_gl2-3_Rep3_ATH14778ColumbiaMarks atrichoblasts from the QC up. Birnbaum_1-24_gl2-3_Rep3_ATH1.CEL
Birnbaum_1-25_J0571-1_Rep1_ATH14779ColumbiaMarks ground tissue (endodermis and cortex) and the QC Birnbaum_1-25_J0571-1_Rep1_ATH1.CEL
Birnbaum_1-26_J0571-2_Rep2_ATH14780ColumbiaMarks ground tissue (endodermis and cortex) and the QC Birnbaum_1-26_J0571-2_Rep2_ATH1.CEL
Birnbaum_1-27_J0571-3_Rep3_ATH14781ColumbiaMarks ground tissue (endodermis and cortex) and the QC Birnbaum_1-27_J0571-3_Rep3_ATH1.CEL
Birnbaum_1-2_src5-2_Rep2_ATH14512LandsbergMarks the QC and the endodermis at least past the mature hair zone Birnbaum_1-2_src5-2_Rep2_ATH1.CEL
Birnbaum_1-3_src5-3_Rep3_ATH14513LandsbergMarks the QC and the endodermis at least past the mature hair zone Birnbaum_1-3_src5-3_Rep3_ATH1.CEL
Birnbaum_1-4_StageI-1_Rep1_ATH14514ColumbiaWhere the root tip reaches its full diameter (about 0.15 mm from the root tip) Birnbaum_1-4_StageI-1_Rep1_ATH1.CEL
Birnbaum_1-5_StageI-2_Rep2_ATH14515ColumbiaWhere the root tip reaches its full diameter (about 0.15 mm from the root tip) Birnbaum_1-5_StageI-2_Rep2_ATH1.CEL
Birnbaum_1-6_StageI-3_Rep3_ATH14516ColumbiaWhere the root tip reaches its full diameter (about 0.15 mm from the root tip) Birnbaum_1-6_StageI-3_Rep3_ATH1.CEL
Birnbaum_1-7_StageI-4_Rep4_ATH14517ColumbiaWhere the root tip reaches its full diameter (about 0.15 mm from the root tip) Birnbaum_1-7_StageI-4_Rep4_ATH1.CEL
Birnbaum_1-8_StageII-1_Rep1_ATH14518ColumbiaWhere cells transition from being optically dense to a more transparent appearance as they begin longitudinal expansion (about 0.30 mm from the root tip) Birnbaum_1-8_StageII-1_Rep1_ATH1.CEL
Birnbaum_1-9_StageII-2_Rep2_ATH14519ColumbiaWhere cells transition from being optically dense to a more transparent appearance as they begin longitudinal expansion (about 0.30 mm from the root tip) Birnbaum_1-9_StageII-2_Rep2_ATH1.CEL