NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:187
Title:AtGenExpress:Effect of brassinosteroid inhibitors on seedlings
Date:2005-02-02
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.Wild-type seedlings were treated with brassinazoles.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
RIKEN-GODA10A43005complete plant N1092RIKENGODA10A4.cel
Treatment: 10uM brassinazole 91 (Brz91) (brassinosteroid biosynthesis inhibitor) for 12h
RIKEN-GODA10B43006complete plant N1092RIKENGODA10B4.cel
Treatment: 10uM brassinazole 91 (Brz91) (brassinosteroid biosynthesis inhibitor) for 12h
RIKEN-GODA1A43007complete plant N1092RIKENGODA1A4.cel
Treatment: mock treatment for 3h
RIKEN-GODA1B43008complete plant N1092RIKENGODA1B4.cel
Treatment: mock treatment for 3h
RIKEN-GODA28A43009complete plant N1092RIKENGODA28A4.cel
Treatment: mock treatment for 3h
RIKEN-GODA28B43010complete plant N1092RIKENGODA28B4.cel
Treatment: mock treatment for 3h
RIKEN-GODA2A43011complete plant N1092RIKENGODA2A4.cel
Treatment: mock treatment for 12h
RIKEN-GODA2B43012complete plant N1092RIKENGODA2B4.cel
Treatment: mock treatment for 12h
RIKEN-GODA30A43013complete plant N1092RIKENGODA30A4.cel
Treatment: 3uM brassinazole 220 (Brz220) (brassinosteroid biosynthesis inhibitor) for 3h
RIKEN-GODA30B43014complete plant N1092RIKENGODA30B4.cel
Treatment: 3uM brassinazole 220 (Brz220) (brassinosteroid biosynthesis inhibitor) for 3h
RIKEN-GODA7A43015complete plant N1092RIKENGODA7A4.cel
Treatment: 10uM brassinazole 220 (Brz220) (brassinosteroid biosynthesis inhibitor) for 3h
RIKEN-GODA7B43016complete plant N1092RIKENGODA7B4.cel
Treatment: 10uM brassinazole 220 (Brz220) (brassinosteroid biosynthesis inhibitor) for 3h