NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:183
Title:AtGenExpress:Effect of ABA during seed imbibition
Date:2005-02-02
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.This experiment studies the effect of two concentrations of ABA during seed imbibition in the Col-0 ecotype.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
RIKEN-NAKABAYASHI1A2955seed N1092RIKENNAKABAYASHI1A.cel
Treatment: no treatment
RIKEN-NAKABAYASHI1B2956seed N1092RIKENNAKABAYASHI1B.cel
Treatment: no treatment
RIKEN-NAKABAYASHI2A2957seed N1092RIKENNAKABAYASHI2A.cel
Treatment: 24 h imbibed in water
RIKEN-NAKABAYASHI2B2958seed N1092RIKENNAKABAYASHI2B.cel
Treatment: 24 h imbibed in water
RIKEN-NAKABAYASHI3A2959seed N1092RIKENNAKABAYASHI3A.cel
Treatment: 24 h imbibed in 3 uM ABA
RIKEN-NAKABAYASHI4A2960seed N1092RIKENNAKABAYASHI4A.cel
Treatment: 24 h imbibed in 30 uM ABA
RIKEN-NAKABAYASHI4B2961seed N1092RIKENNAKABAYASHI4B.cel
Treatment: 24 h imbibed in 30 uM ABA
RIKEN-NAKABAYASHI5B2962seed N1092RIKENNAKABAYASHI5B.cel
Treatment: 24 h imbibed in 3 uM ABA