NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:179
Title:AtGenExpress:Effect of brassinosteroids in seedlings
Date:2005-02-02
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.det2 mutant seedlings were treated with several brassinosteroid compounds.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
RIKEN-GODA10A-62903Colwhole plant N6159RIKENGODA10A6.cel
Treatment: 1uM typhasterol for 3h
RIKEN-GODA10B-62904Colwhole plant N6159RIKENGODA10B6.cel
Treatment: 1uM typhasterol for 3h
RIKEN-GODA11A-62905Colwhole plant N6159RIKENGODA11A6.cel
Treatment: 1uM 6-deoxocastasterone for 3h
RIKEN-GODA11B-62906Colwhole plant N6159RIKENGODA11B6.cel
Treatment: 1uM 6-deoxocastasterone for 3h
RIKEN-GODA12A-62907Colwhole plant N6159RIKENGODA12A6.cel
Treatment: 100nM castasterone for 3h
RIKEN-GODA12B-62908Colwhole plant N6159RIKENGODA12B6.cel
Treatment: 100nM castasterone for 3h
RIKEN-GODA13A-62909Colwhole plant N6159RIKENGODA13A6.cel
Treatment: 10nM brassinolide for 3h
RIKEN-GODA13B-62910Colwhole plant N6159RIKENGODA13B6.cel
Treatment: 10nM brassinolide for 3h
RIKEN-GODA1A-62911Colwhole plant N6159RIKENGODA1A6.cel
Treatment: mock treatment for 3h
RIKEN-GODA1B-62912Colwhole plant N6159RIKENGODA1B6.cel
Treatment: mock treatment for 3h
RIKEN-GODA2A-62913Colwhole plant N6159RIKENGODA2A6.cel
Treatment: 10uM campestanol for 3h
RIKEN-GODA2B-62914Colwhole plant N6159RIKENGODA2B6.cel
Treatment: 10uM campestanol for 3h
RIKEN-GODA3A-62915Colwhole plant N6159RIKENGODA3A6.cel
Treatment: 1uM 6-deoxocathasterone for 3h
RIKEN-GODA3B-62916Colwhole plant N6159RIKENGODA3B6.cel
Treatment: 1uM 6-deoxocathasterone for 3h
RIKEN-GODA4A-62917Colwhole plant N6159RIKENGODA4A6.cel
Treatment: 1uM cathasterone for 3h
RIKEN-GODA4B-62918Colwhole plant N6159RIKENGODA4B6.cel
Treatment: 1uM cathasterone for 3h
RIKEN-GODA5A-62919Colwhole plant N6159RIKENGODA5A6.cel
Treatment: 1uM 6-deoxoteasterone for 3h
RIKEN-GODA5B-62920Colwhole plant N6159RIKENGODA5B6.cel
Treatment: 1uM 6-deoxoteasterone for 3h
RIKEN-GODA6A-62921Colwhole plant N6159RIKENGODA6A6.cel
Treatment: 1uM teasterone for 3h
RIKEN-GODA6B-62922Colwhole plant N6159RIKENGODA6B6.cel
Treatment: 1uM teasterone for 3h
RIKEN-GODA7A-62923Colwhole plant N6159RIKENGODA7A6.cel
Treatment: 1uM 3-dehydro-6-deoxoteasterone for 3h
RIKEN-GODA7B-62924Colwhole plant N6159RIKENGODA7B6.cel
Treatment: 1uM 3-dehydro-6-deoxoteasterone for 3h
RIKEN-GODA8A-62925Colwhole plant N6159RIKENGODA8A6.cel
Treatment: 1uM 3-dehydroteasterone for 3h
RIKEN-GODA8B-62926Colwhole plant N6159RIKENGODA8B6.cel
Treatment: 1uM 3-dehydroteasterone for 3h
RIKEN-GODA9A-62927Colwhole plant N6159RIKENGODA9A6.cel
Treatment: 1uM 6-deoxotyphasterol for 3h
RIKEN-GODA9B-62928Colwhole plant N6159RIKENGODA9B6.cel
Treatment: 1uM 6-deoxotyphasterol for 3h