NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:178
Title:AtGenExpress:Brassinolide time course in wildtype and det2-1 mutant seedlings
Date:2005-02-02
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.Wild-type and det2 mutant seedlings were treated with brassinolide for 30 min, 1 hr and 3 hr.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
RIKEN-GODA16A2879seedling N1092RIKENGODA16A.cel
Treatment: 10nM BL for 1h
RIKEN-GODA16B2880seedling N1092RIKENGODA16B.cel
Treatment: 10nM BL for 1h
RIKEN-GODA17AC2881seedling N1092RIKENGODA17AC.cel
Treatment: mock treatment for 3h
RIKEN-GODA17BC2882seedling N1092RIKENGODA17BC.cel
Treatment: mock treatment for 3h
RIKEN-GODA1AC2883seedling N1092RIKENGODA1AC.cel
Treatment: mock treatment for 30min
RIKEN-GODA1BC2884seedling N1092RIKENGODA1BC.cel
Treatment: mock treatment for 30min
RIKEN-GODA24A2885seedling N1092RIKENGODA24A.cel
Treatment: 10nM BL for 3h
RIKEN-GODA24B2886seedling N1092RIKENGODA24B.cel
Treatment: 10nM BL for 3h
RIKEN-GODA31A2887Colseedling N6159RIKENGODA31A.cel
Treatment: mock treatment for 30min
RIKEN-GODA31B2888Colseedling N6159RIKENGODA31B.cel
Treatment: mock treatment for 30min
RIKEN-GODA32A2889Colseedling N6159RIKENGODA32A.cel
Treatment: 10nM BL for 30min
RIKEN-GODA32B2890Colseedling N6159RIKENGODA32B.cel
Treatment: 10nM BL for 30min
RIKEN-GODA33A2891Colseedling N6159RIKENGODA33A.cel
Treatment: mock treatment for 1h
RIKEN-GODA33B2892Colseedling N6159RIKENGODA33B.cel
Treatment: mock treatment for 1h
RIKEN-GODA34A2893Colseedling N6159RIKENGODA34A.cel
Treatment: 10nM BL for 1h
RIKEN-GODA34B2894Colseedling N6159RIKENGODA34B.cel
Treatment: 10nM BL for 1h
RIKEN-GODA35A2895Colseedling N6159RIKENGODA35A.cel
Treatment: mock treatment for 3h
RIKEN-GODA35B2896Colseedling N6159RIKENGODA35B.cel
Treatment: mock treatment for 3h
RIKEN-GODA36A2897Colseedling N6159RIKENGODA36A.cel
Treatment: 10nM BL for 3h
RIKEN-GODA36B2898Colseedling N6159RIKENGODA36B.cel
Treatment: 10nM BL for 3h
RIKEN-GODA8A2899seedling N1092RIKENGODA8A.cel
Treatment: 10nM BL for 30min
RIKEN-GODA8B2900seedling N1092RIKENGODA8B.cel
Treatment: 10nM BL for 30min
RIKEN-GODA9AC2901seedling N1092RIKENGODA9AC.cel
Treatment: mock treatment for 1h
RIKEN-GODA9BC2902seedling N1092RIKENGODA9BC.cel
Treatment: mock treatment for 1h