NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:175
Title:AtGenExpress:IAA time course in wildtype seedlings
Date:2005-02-02
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.Wild-type seedlings were treated with IAA for 30 min, 1 hr and 3 hr.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
RIKEN-GODA10A2831seedling N1092RIKENGODA10A.cel
Treatment: 1uM IAA for 1h
RIKEN-GODA10B2832seedling N1092RIKENGODA10B.cel
Treatment: 1uM IAA for 1h
RIKEN-GODA17AD2833seedling N1092RIKENGODA17AD.cel
Treatment: mock treatment for 3h
RIKEN-GODA17BD2834seedling N1092RIKENGODA17BD.cel
Treatment: mock treatment for 3h
RIKEN-GODA18A2835seedling N1092RIKENGODA18A.cel
Treatment: 1uM IAA for 3h
RIKEN-GODA18B2836seedling N1092RIKENGODA18B.cel
Treatment: 1uM IAA for 3h
RIKEN-GODA1AD2837seedling N1092RIKENGODA1AD.cel
Treatment: mock treatment for 30min
RIKEN-GODA1BD2838seedling N1092RIKENGODA1BD.cel
Treatment: mock treatment for 30min
RIKEN-GODA2A2839seedling N1092RIKENGODA2A.cel
Treatment: 1uM IAA for 30min
RIKEN-GODA2B2840seedling N1092RIKENGODA2B.cel
Treatment: 1uM IAA for 30min
RIKEN-GODA9AD2841seedling N1092RIKENGODA9AD.cel
Treatment: mock treatment for 1h
RIKEN-GODA9BD2842seedling N1092RIKENGODA9BD.cel
Treatment: mock treatment for 1h