NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:174
Title:AtGenExpress:Methyl Jasmonate time course in wildtype
Date:2005-02-02
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.Wild-type seedlings were treated with methyl jasmonate for 30 min, 1 hr and 3 hr.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
RIKEN-GODA14A2819seedling N1092RIKENGODA14A.cel
Treatment: 10uM MJ for 1h
RIKEN-GODA14B2820seedling N1092RIKENGODA14B.cel
Treatment: 10uM MJ for 1h
RIKEN-GODA17AF2821seedling N1092RIKENGODA17AF.cel
Treatment: mock treatment for 3h
RIKEN-GODA17BF2822seedling N1092RIKENGODA17BF.cel
Treatment: mock treatment for 3h
RIKEN-GODA1AF2823seedling N1092RIKENGODA1AF.cel
Treatment: mock treatment for 30min
RIKEN-GODA1BF2824seedling N1092RIKENGODA1BF.cel
Treatment: mock treatment for 30min
RIKEN-GODA22A2825seedling N1092RIKENGODA22A.cel
Treatment: 10uM MJ for 3h
RIKEN-GODA22B2826seedling N1092RIKENGODA22B.cel
Treatment: 10uM MJ for 3h
RIKEN-GODA6A2827seedling N1092RIKENGODA6A.cel
Treatment: 10uM MJ for 30min
RIKEN-GODA6B2828seedling N1092RIKENGODA6B.cel
Treatment: 10uM MJ for 30min
RIKEN-GODA9AF2829seedling N1092RIKENGODA9AF.cel
Treatment: mock treatment for 1h
RIKEN-GODA9BF2830seedling N1092RIKENGODA9BF.cel
Treatment: mock treatment for 1h