NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:173
Title:AtGenExpress:Zeatin time course in wildtype seedlings
Date:2005-02-02
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.Wild-type seedlings were treated with zeatin for 30 min, 1 hr and 3 hr.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
RIKEN-GODA11A2807seedling N1092RIKENGODA11A.cel
Treatment: 1uM zeatin for 1h
RIKEN-GODA11B2808seedling N1092RIKENGODA11B.cel
Treatment: 1uM zeatin for 1h
RIKEN-GODA17AG2809seedling N1092RIKENGODA17AG.cel
Treatment: mock treatment for 3h
RIKEN-GODA17BG2810seedling N1092RIKENGODA17BG.cel
Treatment: mock treatment for 3h
RIKEN-GODA19A2811seedling N1092RIKENGODA19A.cel
Treatment: 1uM zeatin for 3h
RIKEN-GODA19B2812seedling N1092RIKENGODA19B.cel
Treatment: 1uM zeatin for 3h
RIKEN-GODA1AG2813seedling N1092RIKENGODA1AG.cel
Treatment: mock treatment for 30min
RIKEN-GODA1BG2814seedling N1092RIKENGODA1BG.cel
Treatment: mock treatment for 30min
RIKEN-GODA3A2815seedling N1092RIKENGODA3A.cel
Treatment: 1uM zeatin for 30min
RIKEN-GODA3B2816seedling N1092RIKENGODA3B.cel
Treatment: 1uM zeatin for 30min
RIKEN-GODA9AG2817seedling N1092RIKENGODA9AG.cel
Treatment: mock treatment for 1h
RIKEN-GODA9BG2818seedling N1092RIKENGODA9BG.cel
Treatment: mock treatment for 1h