NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:172
Title:AtGenExpress:ACC time course in wildtype seedlings
Date:2005-02-02
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.Wild-type seedlings were treated with ACC for 30 min, 1 hr and 3 hr.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
RIKEN-GODA15A2795seedling N1092RIKENGODA15A.cel
Treatment: 10uM ACC for 1h
RIKEN-GODA15B2796seedling N1092RIKENGODA15B.cel
Treatment: 10uM ACC for 1h
RIKEN-GODA17AA2797seedling N1092RIKENGODA17AA.cel
Treatment: mock treatment for 3h
RIKEN-GODA17BA2798seedling N1092RIKENGODA17BA.cel
Treatment: mock treatment for 3h
RIKEN-GODA1AA2799seedling N1092RIKENGODA1AA.cel
Treatment: mock treatment for 30min
RIKEN-GODA1BB2800seedling N1092RIKENGODA1BB.cel
Treatment: mock treatment for 30min
RIKEN-GODA23A2801seedling N1092RIKENGODA23A.cel
Treatment: 10uM ACC for 3h
RIKEN-GODA23B2802seedling N1092RIKENGODA23B.cel
Treatment: 10uM ACC for 3h
RIKEN-GODA7A2803seedling N1092RIKENGODA7A.cel
Treatment: 10uM ACC for 30min
RIKEN-GODA7B2804seedling N1092RIKENGODA7B.cel
Treatment: 10uM ACC for 30min
RIKEN-GODA9AA2805seedling N1092RIKENGODA9AA.cel
Treatment: mock treatment for 1h
RIKEN-GODA9BA2806seedling N1092RIKENGODA9BA.cel
Treatment: mock treatment for 1h