NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:	169
Title:	AtGenExpress:Pathogen Series:Response to Erysiphe orontii infection
Date:	2005-02-02
Description:	AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.Responses to E. orontii infection were assayed in wild-type Col-0 plants at 6, 12, 18, 24, 48, 72, 96, and 120 hours after inoculation of adult leaves. Inoculation was done via settling tower, using 10 day old E. orontii cultures. Leaves number 7 to 10 were selected for profiling.
ftp Link:	ftp Link

Slide Information:

Slide ID	Slide Name	Tissue	Stock Code	Cel File
JD AT+EO COL WT 02D INFECTED	2721	leaves	N6673	JD_AT+EO_COL_WT_02D_INFECTED.cel
JD AT+EO COL WT 02D INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 2 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 02D UNINFECTED	2722	leaves	N6673	JD_AT+EO_COL_WT_02D_UNINFECTED.cel
JD AT+EO COL WT 02D UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 2 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 03D INFECTED	2723	leaves	N6673	JD_AT+EO_COL_WT_03D_INFECTED.cel
JD AT+EO COL WT 03D INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 3 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 03D UNINFECTED	2724	leaves	N6673	JD_AT+EO_COL_WT_03D_UNINFECTED.cel
JD AT+EO COL WT 03D UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 3 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 04D INFECTED	2725	leaves	N6673	JD_AT+EO_COL_WT_04D_INFECTED.cel
JD AT+EO COL WT 04D INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 4 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 04D UNINFECTED	2726	leaves	N6673	JD_AT+EO_COL_WT_04D_UNINFECTED.cel
JD AT+EO COL WT 04D UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 4 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 05D INFECTED	2727	leaves	N6673	JD_AT+EO_COL_WT_05D_INFECTED.cel
JD AT+EO COL WT 05D INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 5 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 05D UNINFECTED	2728	leaves	N6673	JD_AT+EO_COL_WT_05D_UNINFECTED.cel
JD AT+EO COL WT 05D UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 5 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 06H INFECTED	2729	leaves	N6673	JD_AT+EO_COL_WT_06H_INFECTED.cel
JD AT+EO COL WT 06H INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 6 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 06H UNINFECTED	2730	leaves	N6673	JD_AT+EO_COL_WT_06H_UNINFECTED.cel
JD AT+EO COL WT 06H UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 6 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 12H INFECTED	2731	leaves	N6673	JD_AT+EO_COL_WT_12H_INFECTED.cel
JD AT+EO COL WT 12H INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 12 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 12H UNINFECTED	2732	leaves	N6673	JD_AT+EO_COL_WT_12H_UNINFECTED.cel
JD AT+EO COL WT 12H UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 12 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 18H INFECTED	2733	leaves	N6673	JD_AT+EO_COL_WT_18H_INFECTED.cel
JD AT+EO COL WT 18H INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 18 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 18H UNINFECTED	2734	leaves	N6673	JD_AT+EO_COL_WT_18H_UNINFECTED.cel
JD AT+EO COL WT 18H UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 18 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 24H INFECTED	2735	leaves	N6673	JD_AT+EO_COL_WT_24H_INFECTED.cel
JD AT+EO COL WT 24H INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 24 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT 24H UNINFECTED	2736	leaves	N6673	JD_AT+EO_COL_WT_24H_UNINFECTED.cel
JD AT+EO COL WT 24H UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 24 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 02D INFECTED	2737	leaves	N6673	JD_AT+EO_COL_WT_EXP2_02D_INFECTED.cel
JD AT+EO COL WT EXP2 02D INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 2 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 02D UNINFECTED	2738	leaves	N6673	JD_AT+EO_COL_WT_EXP2_02D_UNINFECTED.cel
JD AT+EO COL WT EXP2 02D UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 2 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 03D INFECTED	2739	leaves	N6673	JD_AT+EO_COL_WT_EXP2_03D_INFECTED.cel
JD AT+EO COL WT EXP2 03D INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 3 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 03D UNINFECTED	2740	leaves	N6673	JD_AT+EO_COL_WT_EXP2_03D_UNINFECTED.cel
JD AT+EO COL WT EXP2 03D UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 3 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 04D INFECTED	2741	leaves	N6673	JD_AT+EO_COL_WT_EXP2_04D_INFECTED.cel
JD AT+EO COL WT EXP2 04D INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 4 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 04D UNINFECTED	2742	leaves	N6673	JD_AT+EO_COL_WT_EXP2_04D_UNINFECTED.cel
JD AT+EO COL WT EXP2 04D UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 4 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 05D INFECTED	2743	leaves	N6673	JD_AT+EO_COL_WT_EXP2_05D_INFECTED.cel
JD AT+EO COL WT EXP2 05D INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 5 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 05D UNINFECTED	2744	leaves	N6673	JD_AT+EO_COL_WT_EXP2_05D_UNINFECTED.cel
JD AT+EO COL WT EXP2 05D UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 5 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 06H INFECTED	2745	leaves	N6673	JD_AT+EO_COL_WT_EXP2_06H_INFECTED.cel
JD AT+EO COL WT EXP2 06H INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 6 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 06H UNINFECTED	2746	leaves	N6673	JD_AT+EO_COL_WT_EXP2_06H_UNINFECTED.cel
JD AT+EO COL WT EXP2 06H UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 6 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 12H INFECTED	2747	leaves	N6673	JD_AT+EO_COL_WT_EXP2_12H_INFECTED.cel
JD AT+EO COL WT EXP2 12H INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 12 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 12H UNINFECTED	2748	leaves	N6673	JD_AT+EO_COL_WT_EXP2_12H_UNINFECTED.cel
JD AT+EO COL WT EXP2 12H UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 12 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 18H INFECTED	2749	leaves	N6673	JD_AT+EO_COL_WT_EXP2_18H_INFECTED.cel
JD AT+EO COL WT EXP2 18H INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 18 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 18H UNINFECTED	2750	leaves	N6673	JD_AT+EO_COL_WT_EXP2_18H_UNINFECTED.cel
JD AT+EO COL WT EXP2 18H UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 18 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 24H INFECTED	2751	leaves	N6673	JD_AT+EO_COL_WT_EXP2_24H_INFECTED.cel
JD AT+EO COL WT EXP2 24H INFECTED	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 24 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO COL WT EXP2 24H UNINFECTED	2752	leaves	N6673	JD_AT+EO_COL_WT_EXP2_24H_UNINFECTED.cel
JD AT+EO COL WT EXP2 24H UNINFECTED	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 24 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 EO INF 12H	2753	leaves	N6673	JD_AT+EO_TIME_EXP3_EO_INF_12H.cel
JD AT+EO TIME EXP3 EO INF 12H	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 12 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 EO INF 18H	2754	leaves	N6673	JD_AT+EO_TIME_EXP3_EO_INF_18H.cel
JD AT+EO TIME EXP3 EO INF 18H	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 18 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 EO INF 24H	2755	leaves	N6673	JD_AT+EO_TIME_EXP3_EO_INF_24H.cel
JD AT+EO TIME EXP3 EO INF 24H	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 24 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 EO INF 2D	2756	leaves	N6673	JD_AT+EO_TIME_EXP3_EO_INF_2D.cel
JD AT+EO TIME EXP3 EO INF 2D	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 2 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 EO INF 3D	2757	leaves	N6673	JD_AT+EO_TIME_EXP3_EO_INF_3D.cel
JD AT+EO TIME EXP3 EO INF 3D	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 3 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 EO INF 4D	2758	leaves	N6673	JD_AT+EO_TIME_EXP3_EO_INF_4D.cel
JD AT+EO TIME EXP3 EO INF 4D	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 4 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 EO INF 5D	2759	leaves	N6673	JD_AT+EO_TIME_EXP3_EO_INF_5D.cel
JD AT+EO TIME EXP3 EO INF 5D	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 5 days post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 EO INF 6H	2760	leaves	N6673	JD_AT+EO_TIME_EXP3_EO_INF_6H.cel
JD AT+EO TIME EXP3 EO INF 6H	Treatment: Plants were inoculated via settling tower with 10-day old cultures of Erysiphe orontii. At 6 hours post-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 UNINF 12H	2761	leaves	N6673	JD_AT+EO_TIME_EXP3_UNINF_12H.cel
JD AT+EO TIME EXP3 UNINF 12H	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 12 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 UNINF 18H	2762	leaves	N6673	JD_AT+EO_TIME_EXP3_UNINF_18H.cel
JD AT+EO TIME EXP3 UNINF 18H	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 18 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 UNINF 24H	2763	leaves	N6673	JD_AT+EO_TIME_EXP3_UNINF_24H.cel
JD AT+EO TIME EXP3 UNINF 24H	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 24 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 UNINF 2D	2764	leaves	N6673	JD_AT+EO_TIME_EXP3_UNINF_2D.cel
JD AT+EO TIME EXP3 UNINF 2D	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 2 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 UNINF 3D	2765	leaves	N6673	JD_AT+EO_TIME_EXP3_UNINF_3D.cel
JD AT+EO TIME EXP3 UNINF 3D	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 3 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 UNINF 4D	2766	leaves	N6673	JD_AT+EO_TIME_EXP3_UNINF_4D.cel
JD AT+EO TIME EXP3 UNINF 4D	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 4 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 UNINF 5D	2767	leaves	N6673	JD_AT+EO_TIME_EXP3_UNINF_5D.cel
JD AT+EO TIME EXP3 UNINF 5D	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 5 days post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.
JD AT+EO TIME EXP3 UNINF 6H	2768	leaves	N6673	JD_AT+EO_TIME_EXP3_UNINF_6H.cel
JD AT+EO TIME EXP3 UNINF 6H	Treatment: Plants were mock-inoculated by placing in settling towers for 15 minutes, then returned to the growth chamber. At 6 hours post-mock-inoculation, leaves number 7 to 10 were harvested. All harvests were done in the middle of the light period.