NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:168
Title:AtGenExpress:Pathogen Series:Pseudomonas half leaf injection
Date:2005-02-02
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate.Half of a Columbia plant leaf was injected with Pseudomonas syringae. The other half of the leaf was collected on a time course for analysis.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
25033064leaf N10922503.cel
Treatment: No Treatment
25043087leaf N10922504.cel
Treatment: Avirulent pathogen (Pseudomonas syringae ES4326 avrRpt2) infection, 4h
25053065leaf N10922505.cel
Treatment: Mock treatment (10mM MgCl2 solution), 4h
25063088leaf N10922506.cel
Treatment: Avirulent pathogen (Pseudomonas syringae ES4326 avrRpt2) infection, 8h
25073089leaf N10922507.cel
Treatment: Mock treatment (10mM MgCl2 solution), 8h
25083067leaf N10922508.cel
Treatment: Avirulent pathogen (Pseudomonas syringae ES4326 avrRpt2) infection, 16h
25093090leaf N10922509.cel
Treatment: Avirulent pathogen (Pseudomonas syringae ES4326 avrRpt2) infection, 24h
25103069leaf N10922510.cel
Treatment: Mock treatment (10mM MgCl2 solution), 24h
25113091leaf N10922511.cel
Treatment: Avirulent pathogen (Pseudomonas syringae ES4326 avrRpt2) infection, 48h
25123092leaf N10922512.cel
Treatment: Mock treatment (10mM MgCl2 solution), 48h
25253071leaf N10922525.cel
Treatment: Virulent pathogen (Pseudomonas syringae ES4326) infection, 48h
25263093leaf N10922526.cel
Treatment: Virulent pathogen (Pseudomonas syringae ES4326) infection, 24h
25273072leaf N10922527.cel
Treatment: Mock treatment (10mM MgCl2 solution), 16h
25283094leaf N10922528.cel
Treatment: Virulent pathogen (Pseudomonas syringae ES4326) infection, 16h
25293063leaf N10922529.cel
Treatment: Virulent pathogen (Pseudomonas syringae ES4326) infection, 8h
25303066leaf N10922530.cel
Treatment: Virulent pathogen (Pseudomonas syringae ES4326) infection, 4h
27833068leaf N10922783.cel
Treatment: Mock treatment (10mM MgCl2 solution), 48h
27843070leaf N10922784.cel
Treatment: Avirulent pathogen (Pseudomonas syringae ES4326 avrRpt2) infection, 48h
27853073leaf N10922785.cel
Treatment: Virulent pathogen (Pseudomonas syringae ES4326) infection, 48h
27863074leaf N10922786.cel
Treatment: Mock treatment (10mM MgCl2 solution), 24h
27873075leaf N10922787.cel
Treatment: Avirulent pathogen (Pseudomonas syringae ES4326 avrRpt2) infection, 24h
27883076leaf N10922788.cel
Treatment: Virulent pathogen (Pseudomonas syringae ES4326) infection, 24h
27893077leaf N10922789.cel
Treatment: Mock treatment (10mM MgCl2 solution), 16h
27903078leaf N10922790.cel
Treatment: Avirulent pathogen (Pseudomonas syringae ES4326 avrRpt2) infection, 16h
27913080leaf N10922791.cel
Treatment: Virulent pathogen (Pseudomonas syringae ES4326) infection, 16h
27923079leaf N10922792.cel
Treatment: Mock treatment (10mM MgCl2 solution), 8h
27933081leaf N10922793.cel
Treatment: Avirulent pathogen (Pseudomonas syringae ES4326 avrRpt2) infection, 8h
27943083leaf N10922794.cel
Treatment: Virulent pathogen (Pseudomonas syringae ES4326) infection, 8h
27953082leaf N10922795.cel
Treatment: Mock treatment (10mM MgCl2 solution), 4h
27963084leaf N10922796.cel
Treatment: Avirulent pathogen (Pseudomonas syringae ES4326 avrRpt2) infection, 4h
27973085leaf N10922797.cel
Treatment: Virulent pathogen (Pseudomonas syringae ES4326) infection, 4h
27983086leaf N10922798.cel
Treatment: no treatment