NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:155
Title:AtGenExpress:Developmental series (mutants and other ecotypes)
Date:2004-07-09
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana.The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate. The focus of this data set is on different tissues and different developmental stages in wild type Columbia (Col-0) and various mutants.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
co-2_0_11367no treatment; apical region; rosett stage co-0-1.CEL
co-2_0_21368no treatment; apical region; rosett stage co-0-2.CEL
co-2_3_113693 days long day condition; apical region; rosett stage co-3-1.CEL
co-2_3_213703 days long day condition; apical region; rosett stage co-3-2.CEL
co-2_5_113715 days long day condition; apical region; rosett stage co-5-1.CEL
co-2_5_213725 days long day condition; apical region; rosett stage co-5-2.CEL
co-2_7_113737 days long day condition; apical region; rosett stage co-7-1.CEL
co-2_7_213747 days long day condition; apical region; rosett stage co-7-2.CEL
Col-0_0_11351no treatment; apical region; rosett stage Col-0-1.CEL
Col-0_0_21352no treatment; apical region; rosett stage Col-0-2.CEL
Col-0_3_113533 days long day condition; apical region; rosett stage Col-3-1.CEL
Col-0_3_213543 days long day condition; apical region; rosett stage Col-3-2.CEL
Col-0_5_113555 days long day condition; apical region; rosett stage Col-5-1.CEL
Col-0_5_213565 days long day condition; apical region; rosett stage Col-5-2.CEL
Col-0_7_113577 days long day condition; apical region; rosett stage Col-7-1.CEL
Col-0_7_213587 days long day condition; apical region; rosett stage Col-7-2.CEL
ft-2_0_11375no treatment; apical region; rosett stage ft-0-1.CEL
ft-2_0_21376no treatment; apical region; rosett stage ft-0-2.CEL
ft-2_3_113773 days long day condition; apical region; rosett stage ft-3-1.CEL
ft-2_3_213783 days long day condition; apical region; rosett stage ft-3-2.CEL
ft-2_5_113795 days long day condition; apical region; rosett stage ft-5-1.CEL
ft-2_5_213805 days long day condition; apical region; rosett stage ft-5-2.CEL
ft-2_7_113817 days long day condition; apical region; rosett stage ft-7-1.CEL
ft-2_7_213827 days long day condition; apical region; rosett stage ft-7-2.CEL
Ler_0_11359no treatment; apical region; rosett stage Ler-0-1.CEL
Ler_0_21360no treatment; apical region; rosett stage Ler-0-2.CEL
Ler_3_113613 days long day condition; apical region; rosett stage Ler-3-1.CEL
Ler_3_213623 days long day condition; apical region; rosett stage Ler-3-2.CEL
Ler_5_113635 days long day condition; apical region; rosett stage Ler-5-1.CEL
Ler_5_213645 days long day condition; apical region; rosett stage Ler-5-2.CEL
Ler_7_113657 days long day condition; apical region; rosett stage Ler-7-1.CEL
Ler_7_213667 days long day condition; apical region; rosett stage Ler-7-2.CEL
lfy-12_0_11383no treatment; apical region; rosett stage lfy-0-1.CEL
lfy-12_0_21384no treatment; apical region; rosett stage lfy-0-2.CEL
lfy-12_3_113853 days long day condition; apical region; rosett stage lfy-3-1.CEL
lfy-12_3_213863 days long day condition; apical region; rosett stage lfy-3-2.CEL
lfy-12_5_113875 days long day condition; apical region; rosett stage lfy-5-1.CEL
lfy-12_5_213885 days long day condition; apical region; rosett stage lfy-5-2.CEL
lfy-12_7_113897 days long day condition; apical region; rosett stage lfy-7-1.CEL
lfy-12_7_213907 days long day condition; apical region; rosett stage lfy-7-2.CEL