NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:153
Title:AtGenExpress:Developmental series (shoots and stems)
Date:2004-07-09
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana.The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate. The focus of this data set is on different tissues and different developmental stages in wild type Columbia (Col-0) and various mutants.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
ATGE_27_A1192stem, 2nd internode ATGE_27_A.CEL
ATGE_27_B1193stem, 2nd internode ATGE_27_B.CEL
ATGE_27_C1194stem, 2nd internode ATGE_27_C.CEL
ATGE_28_A211951st node ATGE_28_A2.CEL
ATGE_28_B211961st node ATGE_28_B2.CEL
ATGE_28_C211971st node ATGE_28_C2.CEL
ATGE_29_A21198shoot apex, inflorescence (after bolting) ATGE_29_A2.CEL
ATGE_29_B21199shoot apex, inflorescence (after bolting) ATGE_29_B2.CEL
ATGE_29_C21200shoot apex, inflorescence (after bolting) ATGE_29_C2.CEL
ATGE_2_A1117hypocotyl ATGE_2_A.CEL
ATGE_2_B1118hypocotyl ATGE_2_B.CEL
ATGE_2_C1119hypocotyl ATGE_2_C.CEL
ATGE_46_A1240Col-0shoot apex, inflorescence (after bolting) ATGE_46_A.CEL
ATGE_46_B1241Col-0shoot apex, inflorescence (after bolting) ATGE_46_B.CEL
ATGE_46_C1242Col-0shoot apex, inflorescence (after bolting) ATGE_46_C.CEL
ATGE_47_A1243Col-0shoot apex, inflorescence (after bolting) ATGE_47_A.CEL
ATGE_47_B1244Col-0shoot apex, inflorescence (after bolting) ATGE_47_B.CEL
ATGE_47_C1245Col-0shoot apex, inflorescence (after bolting) ATGE_47_C.CEL
ATGE_48_A1246Col-0shoot apex, inflorescence (after bolting) ATGE_48_A.CEL
ATGE_48_B1247Col-0shoot apex, inflorescence (after bolting) ATGE_48_B.CEL
ATGE_48_C1248Col-0shoot apex, inflorescence (after bolting) ATGE_48_C.CEL
ATGE_49_A1249Col-0shoot apex, inflorescence (after bolting) ATGE_49_A.CEL
ATGE_49_B1250Col-0shoot apex, inflorescence (after bolting) ATGE_49_B.CEL
ATGE_49_C1251Col-0shoot apex, inflorescence (after bolting) ATGE_49_C.CEL
ATGE_4_A1123shoot apex, vegetative + young leaves ATGE_4_A.CEL
ATGE_4_B1124shoot apex, vegetative + young leaves ATGE_4_B.CEL
ATGE_4_C1125shoot apex, vegetative + young leaves ATGE_4_C.CEL
ATGE_50_A1252Col-0shoot apex, inflorescence (after bolting) ATGE_50_A.CEL
ATGE_50_B1253Col-0shoot apex, inflorescence (after bolting) ATGE_50_B.CEL
ATGE_50_C1254Col-0shoot apex, inflorescence (after bolting) ATGE_50_C.CEL
ATGE_51_A1255Col-0shoot apex, inflorescence (after bolting) ATGE_51_A.CEL
ATGE_51_B1256Col-0shoot apex, inflorescence (after bolting) ATGE_51_B.CEL
ATGE_51_C1257Col-0shoot apex, inflorescence (after bolting) ATGE_51_C.CEL
ATGE_52_A1258Col-0shoot apex, inflorescence (after bolting) ATGE_52_A.CEL
ATGE_52_B1259Col-0shoot apex, inflorescence (after bolting) ATGE_52_B.CEL
ATGE_52_C1260Col-0shoot apex, inflorescence (after bolting) ATGE_52_C.CEL
ATGE_6_A1129shoot apex, vegetative ATGE_6_A.CEL
ATGE_6_B1130shoot apex, vegetative ATGE_6_B.CEL
ATGE_6_C1131shoot apex, vegetative ATGE_6_C.CEL
ATGE_8_A1135shoot apex, transition (before bolting) ATGE_8_A.CEL
ATGE_8_B1136shoot apex, transition (before bolting) ATGE_8_B.CEL
ATGE_8_C1137shoot apex, transition (before bolting) ATGE_8_C.CEL