NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Title:AtGenExpress:Developmental series (roots)
Description:AtGenExpress: A multinational coordinated effort to uncover the transcriptome of the multicellular model organism Arabidopsis thaliana.The activity of genes and their encoded products can be regulated in several ways, but transcription is the primary level, since all other modes of regulation (RNA splicing, RNA and protein stability, etc.) are dependent on a gene being transcribed in the first place. The importance of transcriptional regulation has been underscored by the recent flood of global expression analyses, which have confirmed that transcriptional co-regulation of genes that act together is the norm, not the exception. Moreover, many studies suggest that evolutionary change is driven in large part by modifications of transcriptional programs. An essential first step toward deciphering the transcriptional code is to determine the expression pattern of all genes. With this goal in mind, an international effort to develop a gene expression atlas of Arabidopsis has been underway since fall 2003. This project, dubbed AtGenExpress, is funded by the DFG, and will provide the Arabidopsis community with access to a large set of Affymetrix microarray data. As part of this collaboration, we have generated expression data from 80 biologicaly different samples in triplicate. The focus of this data set is on different tissues and different developmental stages in wild type Columbia (Col-0) and various mutants.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
ATGE_3_A1120roots ATGE_3_A.CEL
ATGE_3_B1121roots ATGE_3_B.CEL
ATGE_3_C1122roots ATGE_3_C.CEL
ATGE_93_A1324root ATGE_93_A.CEL
ATGE_93_B1325root ATGE_93_B.CEL
ATGE_93_C1326root ATGE_93_C.CEL
ATGE_94_A1327root ATGE_94_A.CEL
ATGE_94_B1328root ATGE_94_B.CEL
ATGE_94_C1329root ATGE_94_C.CEL
ATGE_95_A1330root ATGE_95_A.CEL
ATGE_95_B1331root ATGE_95_B.CEL
ATGE_95_C1332root ATGE_95_C.CEL
ATGE_98_A1339root ATGE_98_A.CEL
ATGE_98_B1340root ATGE_98_B.CEL
ATGE_98_C1341root ATGE_98_C.CEL
ATGE_99_A1342root ATGE_99_A.CEL
ATGE_99_B1343root ATGE_99_B.CEL
ATGE_99_C1344root ATGE_99_C.CEL
ATGE_9_A1138roots ATGE_9_A.CEL
ATGE_9_B1139roots ATGE_9_B.CEL
ATGE_9_C1140roots ATGE_9_C.CEL