NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:133
Title:The role of membrane fluidity in low temperature perception
Date:2005-03-15
Description:The aim of this work is to investigate whether A. thaliana senses low temperature by perceiving changes in membrane fluidity. To this end, we have performed an experiment to test whether mutant or transgenic plants with altered membrane lipid composition, regulate their gene expression in the same manner as wild type plants in response to cold. Previous work has demonstrated that a change in the expression levels of a number of genes is important in acquiring tolerance to low temperatures. Chemicals which rigidify cell membranes in such a way as to mimic the effects of cold have been shown to be able to induce the expression of such genes. However, because of the non-specific nature of such chemical treatments, it has not been possible to demonstrate unequivocally that the changes in gene expression observed were the result of changes in membrane fluidity.All of the mutants used in our experiment, fab1, fad2-2 and the fad3/fad7/fad8 mutant, have increased lipid saturation levels compared to wild type plants and are thought to have reduced membrane fluidity. The fab1 mutant is also known to be sensitive to chilling. In the fab1 mutant the elongation of 16:0 fatty acids to 18:0 is reduced. The fad2-2 mutant has reduced 18:1 desaturase activity and hence reduced amounts of polyunsaturated phospholipids. The fad3/fad7/fad8 triple mutant is deficient in 18:2 desaturase activity and consequently unable to synthesise trienoic fatty acids. The transgenic line used contained a 35S::FAD3 transgene and in contrast to the mutants tested, should have increased lipid desaturation and increased membrane fluidity. A. thaliana ecotype Col-0 was used as the wild type control for the fab1 and fad2-2 mutants, in addition to the 35S::FAD3 line. The fad3/fad7/fad8 mutant had previously been transformed with the 35S::apoaequorin transgene and a Columbia line expressing apoaequorin under the control of the same promoter, was included to control for the presence of aequorin.Nine day old seedlings grown in petri-dishes on MS were transferred from their growth room (20 oC, 16 h photoperiod, 100 E m-2 s-1) to a growth cabinet (20 oC, 16 h photoperiod,160 m-2 s-1) 24 hours before the experiment began. The next day, one petri-dish of seedlings from each line of plants used was transferred to a cabinet running at 5 oC (16 h photoperiod,160 E m-2 s-1). Control plates remained at 20 oC. Seedlings were harvested after three hours and frozen in liquid nitrogen.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
Evans_2-10_col-aeq-cold_Rep1_ATH11636whole seedling Evans_2-10_col-aeq-cold_ATH1.CEL
Treatment: 35S::AQ Col, 5 degrees
Evans_2-11_FAD3-7-8-mut-aeq-ambient_Rep1_ATH11639whole seedling Evans_2-11_fab3-7-8-mut-aeq-ambient_ATH1.CEL
Treatment: fad3/fad7/fad8 35S::AQ,20 degrees
Evans_2-12_FAD3-7-8-mut-aeq-cold_Rep1_ATH11640whole seedling Evans_2-12_fab3-7-8-mut-aeq-cold_ATH1.CEL
Treatment: fad3/fad7/fad8 35S::AQ, 5 degrees
Evans_2-1_col-WT-ambient_Rep1_ATH11637whole seedling N1092Evans_2-1_col-WT-ambient_ATH1.CEL
Treatment: Columbia, 20 degrees (control)
Evans_2-2_col-WT-cold_Rep1_ATH11638whole seedling N1092Evans_2-2_col-WT-cold_ATH1.CEL
Treatment: Columbia, 5 degrees (control)
Evans_2-3_fab1-mut-ambient_Rep1_ATH11629whole seedling Evans_2-3_fab1-mut-ambient_ATH1.CEL
Treatment: fab1 mutant, 20 degrees
Evans_2-4_fab1-mut-cold_Rep1_ATH11630whole seedling Evans_2-4_fab1-mut-cold_ATH1.CEL
Treatment: fab1 mutant, 5 degrees
Evans_2-5_fad2-mut-ambient_Rep1_ATH11631whole seedling Evans_2-5_fab2-mut-ambient_ATH1.CEL
Treatment: fad2 mutant, 20 degrees
Evans_2-6_fad2-mut-cold_Rep1_ATH11632whole seedling Evans_2-6_fab2-mut-cold_ATH1.CEL
Treatment: fad2 mutant, 5 degrees
Evans_2-7_35s-FAD3-ambient_Rep1_ATH11633whole seedling Evans_2-7_35s-FAD3-ambient_ATH1.CEL
Treatment: 35S::FAD3, 20 degrees
Evans_2-8_35s-FAD3-cold_Rep1_ATH11634whole seedling Evans_2-8_35s-FAD3-cold_ATH1.CEL
Treatment: 35S::FAD3, 5 degrees
Evans_2-9_col-aeq-ambient_Rep1_ATH11635whole seedling Evans_2-9_col-aeq-ambient_ATH1.CEL
Treatment: 35S::AQ Col, 20 degrees