NASCArrays Information at The BAR

Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the experiment number. To download the CEL files, please click on the ftp link.

Experiment:121
Title:Changes in Gene Expression in Brassica oleracea Shoots during Phosphate Starvation (Cross-species st
Date:2004-07-19
Description:The aim of this study is to study gene expression in Brassica oleracea in shoot tissues of plants grown under contrasting P supplies (see Hammond JP et al., 2003, Plant Physiology, 132, 578-596 for background). Seeds of B. oleracea (var. alboglabra, A12dH) were first washed in 70% (v/v) ethanol/water, rinsed in distilled water and surface sterilised using 50% (v/v) domestic bleach/water. Seeds were rinsed and imbibed for 3 to 5 days in sterile distilled water at 4°C to break dormancy. Following imbibition, B. oleracea seeds were sown in un-vented, polycarbonate culture boxes (Sigma-Aldrich Company Ltd., Dorset UK). Seedlings were grown for 21 days on perforated polycarbonate discs (diameter 91 mm by 5 mm) placed on 75 ml of 0.8% (w/v) agar containing 1% (w/v) sucrose and a basal salt mix. Roots grew into the agar, but shoots remained on the opposite side of the disc. After 21 days, seedlings were transferred, still on polycarbonate discs, to a hydroponics system situated in a Saxcil growth cabinet (16 h daylength, set to 22°C and 80% humidity). Each polycarbonate disc was placed on a light-proof 500 ml beaker over 450 ml of nutrient solution. After 7 days, half the plants were transferred to nutrient solution containing no phosphate and the other half remained on full nutrient solution (control plants). Shoots were harvested 100 h after the withdrawal of P. Samples were snap frozen in liquid nitrogen. RNA was extracted using the TRIzol extraction method and cleaned through a Qiagen RNeasy column.
ftp Link:ftp Link

Slide Information:
Slide IDSlide NameGenetic BackgroundTissueStock CodeCel File
Broadley_1-1_A1-Bo+P-nutrient-replete_Rep1_ATH11574shoot tissue MRB002_ATH1_A1-Broadley-Bo+P.CEL
Broadley_1-2_A2-Bo-P-phosphate-starved_Rep1_ATH11575shoot tissue MRB002_ATH1_A2-Broadley-Bo-P.CEL
Broadley_1-3_A3-Bo-P2-phosphate-starved_Rep2_ATH11576shoot tissue MRB002_ATH1_A3-Broadley-Bo-P2_repeat.CEL
Broadley_1-4_A4-Bo-P3-phosphate-starved_Rep3_ATH11577shoot tissue MRB002_ATH1_A4-Broadley-Bo-P3.CEL
Broadley_1-5_A5-Bo+P2-nutrient-replete_Rep2_ATH11578shoot tissue MRB002_ATH1_A5-Broadley-Bo+P2.CEL
Broadley_1-6_A6-Bo+P3-nutrient-replete_Rep3_ATH11579shoot tissue MRB002_ATH1_A6-Broadley-Bo+P3.CEL