NASCArrays Information at The BAR
NASCArrays Information at The BAR
Welcome to NASCArrays information at the BAR. This page hosts meta-information from the NASCArrays service (2002-2013). This information was parsed
from text files available on the NASCArrays site. NASCArrays data is on iPlant server. To download experiment data from iPlant, please click on the
experiment number. To download the CEL files, please click on the ftp link.
| Experiment: | 12 |
| Title: | Changes in gene expression profiles under phosphate deficiency. |
| Date: | 2002-08-20 |
| Description: | Background: Since chemical assays of soil nutrients are unreliable the UK horticultural and agricultural industries routinely apply large amounts of inorganic fertiliser to maintain crop yields and quality. Excessive fertiliser applications are both costly and can lead to unnecessary pollution. A possible solution to this problem is to use sensor (GM or non-GM) technologies that exploit the changes in plant gene expression profiles under incipient nutrient deficiency. The aim of this project is to identify genes upregulated in the early stages of nutrient depletion. Methods: Arabidopsis ecotype Col-5 (N1644) will be grown hydroponically using established techniques. In parallel experiments NP and K will be withdrawn individually after 21 d growth. RNA will be extracted from shoots of nutrient replete (control) and nutrient depleted plants 24 h after the removal of nutrients. Shoot nutrient content will be assayed by ICP-EMS as a reference. By comparing expression profiles we will be able to differentiate between genes that are upregulated by lack of specific nutrients and those upregulated by a universal stress-response system. Promoters and transcripts of these genes will underpin the development of novel sensor technologies and knowledge of the gene expression profiles will improve our understanding of the physiology of plant mineral nutrition. |
| ftp Link: | ftp Link |
| Slide ID | Slide Name | Genetic Background | Tissue | Stock Code | Cel File |
|---|---|---|---|---|---|
| A1-exp1-Hammo-NPK | 74 | Rosette leaves | N1644 | JH001_AG_A1-Hammo-NPK.CEL | |
| Treatment: Full nutrient solution: KH2PO4 0.25mM, KOH 0.5mM, MgSO4.7H2O 0.75mM, CaCl2.2H2O 0.025 FeNaEDTA 0.1mM, H3BO3 0.03 mM, MnSO4.4H2O 0.01mM, ZnSO4.7H2O 0.001mM, CuSO4.5H2O 0.003 mM, Na2MoO4.2H2O 0.0005mM | |||||
| A2-exp1-Hammo-PO6 | 76 | Rosette leaves | N1644 | JH001_AG_A2-Hammo-PO6.CEL | |
| Treatment: Full nutrient solution: KH2PO4 0.25mM, KOH 0.5mM, MgSO4.7H2O 0.75mM, CaCl2.2H2O 0.025 FeNaEDTA 0.1mM, H3BO3 0.03 mM, MnSO4.4H2O 0.01mM, ZnSO4.7H2O 0.001mM, CuSO4.5H2O 0.003 mM, Na2MoO4.2H2O 0.0005mM. This source has no KH2PO4 (No Phosphate!). It has 0.125mM additional K2SO4. | |||||
| A3-exp1-Hammo-P24 | 78 | Rosette leaves | N1644 | JH001_AG_A3-Hammo-P24.CEL | |
| Treatment: Full nutrient solution: KH2PO4 0.25mM, KOH 0.5mM, MgSO4.7H2O 0.75mM, CaCl2.2H2O 0.025 FeNaEDTA 0.1mM, H3BO3 0.03 mM, MnSO4.4H2O 0.01mM, ZnSO4.7H2O 0.001mM, CuSO4.5H2O 0.003 mM, Na2MoO4.2H2O 0.0005mM | |||||
| A4-exp1-Hammo-P72 | 80 | Rosette leaves | N1644 | JH001_AG_A4-Hammo-P72.CEL | |
| Treatment: Full nutrient solution: KH2PO4 0.25mM, KOH 0.5mM, MgSO4.7H2O 0.75mM, CaCl2.2H2O 0.025 FeNaEDTA 0.1mM, H3BO3 0.03 mM, MnSO4.4H2O 0.01mM, ZnSO4.7H2O 0.001mM, CuSO4.5H2O 0.003 mM, Na2MoO4.2H2O 0.0005mM. This source has no KH2PO4 (No Phosphate!). It has 0.125mM additional K2SO4. | |||||