BAR News & Other Announcements

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Gene Slider

Try out our Gene Slider tool for exploring more than 90000 conserved non-coding sequences in the Brassicaceae from Haudry et al. 2013, displayed along with putative transcription factor binding sites from the JASPAR database.

Grape eFP Browser

We've developed a Grape eFP Browser based on gene expression data in Fasoli et al.'s 2012 Plant Cell paper. Our Expressolog Tree Viewer for exploring both sequence and expression pattern similiarity for homologs in 10 plant species now includes grape too.

Outreach

The BAR will be at this year's ASPB in Minneapolis and the ICAR meeting in Paris. Drop by the Plant Bioinformatics booth in Minneapolis, or the BAR booth in Paris. We're also participating in a mini-symposium and workshops at both conferences, where we'll present our work on contributing to the new Arabidopsis information portal at Araport.org.

Thank you!

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Gene Expression and Protein Tools

View expression patterns as electronic fluorescent pictographs or heatmaps, explore promoters, identify protein-protein interactions and more.

ePlant

ePlant
(new version beta)
Go!
Legacy ePlant
(PLOS ONE version)
Go! Pub

Expression Anglers

Expression Angler
Go! Pub
Poplar Expression Angler
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Sample Angler
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e-Northerns w. Expression Browser
Go! Pub
Poplar Expression Browser
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Arabidopsis eFP Browsers

Arabidopsis eFP Browser
Go! Pub
Cell eFP Browser
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Arabidopsis Seed Coat eFP Browser
Go! Pub
Arabidopsis Translatome eFP Browser
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Arabidopsis Spatio-Temporal Root Stress eFP Browser
Go!

Other Dicot eFP Browsers

Poplar eFP Browser
Go! Pub Pub
Medicago eFP Browser
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Soybean eFP Browser
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Potato eFP Browser
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Tomato eFP Browser
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E. salsugineum eFP Browser
Go! Pub

Monocot eFP Browsers

Maize eFP Browser
Go! Pub Pub
Rice eFP Browser
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Barley eFP Browser
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Triticale eFP Browser
Go! Pub

Other Gene Expression & Protein Tools

Mouse eFP Browser
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Human eFP Browser
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Expressolog Tree Viewer
Go! Pub
Promomer
Go! Pub
Cistome
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Arabidopsis Interactions Viewer
Go! Pub
Rice Interactions Viewer
Go! Pub
Gene Slider
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Molecular Markers and Mapping Tools

Perform Next Generation Mapping, or generate your own markers using our molecular marker tools.

Next Generation Mapping
Go! Pub
Marker Tracker
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Blast Digester
Go! Pub
CapsID
Go! Pub

Other Genomic Tools and Widgets

Remove duplicates, perform multi-dimensional Venn analyses, or generate random lists of identifiers.

Arabidopsis Citation Network Viewer
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ClustalW with MView Output
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DataMetaFormatter
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Heatmapper
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Heatmapper Plus
Go!
Duplicate Remover
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Venn Selector
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Venn SuperSelector
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Random ID list generator
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AGURR
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Classification Super Viewer
Go! Pub
_at to AGI converter
Go!
MASTA
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GeneMANIA
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Topographic PhyloMap
Go!

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